SMTL ID : 6ska.1

Teneurin 2 in complex with Latrophilin 1 Lec-Olf domains

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.86 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: L.1385, N.1403, S.1405, N.1406, M.1451, I.1452, S.1467, N.1468, D.1470, F.1471, Q.1472 No protein-ligand interaction detected (PLIP)

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: Y.670, Y.679, N.682, M.695, D.696 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain A: Q.835, C.837, N.839, T.841, R.843 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.843 NAG-NAG.4: 5 residues within 4Å: Chain A: N.958, V.959, S.960, Q.971, R.978 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.978 NAG-NAG.5: 3 residues within 4Å: Chain A: N.1059, E.1680, G.1681 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain A: R.1706, N.1714, Q.1737, Y.1738, S.1739 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 4 residues within 4Å: Chain A: N.21, S.23, Y.32, E.56 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.23 NAG.8: 6 residues within 4Å: Chain A: D.769, T.777, N.778, S.788, H.790, K.1643 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.790 NAG.9: 4 residues within 4Å: Chain A: H.855, R.871, N.873, S.884 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.871, A:S.884 NAG.10: 1 residues within 4Å: Chain A: N.1263 No protein-ligand interaction detected (PLIP) NAG.11: 4 residues within 4Å: Chain A: G.296, L.297, S.331, N.333 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.331

1 x CA: CALCIUM ION(Non-covalent)

CA.12: 6 residues within 4Å: Chain B: D.230, N.278, A.279, F.280, V.323, D.324 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.230, B:A.279, B:V.323

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Toro, D. et al., Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons. Cell (2020)

Release Date

2020-02-12

Peptides

Teneurin-2: A
Adhesion G protein-coupled receptor L1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Teneurin-2

Adhesion G protein-coupled receptor L1