SMTL ID : 6ske.1 (1 other biounit)

Teneurin 2 in complex with Latrophilin 2 Lec domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.62 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 11 residues within 4Å: Chain A: L.1301, N.1319, S.1321, N.1322, M.1367, I.1368, S.1383, N.1384, D.1386, F.1387, Q.1388 No protein-ligand interaction detected (PLIP)

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: Y.586, Y.595, N.598, M.611, D.612 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain A: E.736, Q.751, C.753, N.755, T.757, R.759, H.771 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.759 NAG-NAG.4: 7 residues within 4Å: Chain A: N.874, V.875, S.876, G.885, L.886, Q.887, R.894 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.894 NAG-NAG.5: 4 residues within 4Å: Chain A: N.975, L.994, E.1596, G.1597 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 6 residues within 4Å: Chain A: R.1622, G.1628, N.1630, Q.1653, Y.1654, S.1655 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 6 residues within 4Å: Chain A: D.685, T.693, N.694, S.704, H.706, K.1559 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.706 NAG.8: 4 residues within 4Å: Chain A: H.771, R.787, N.789, S.800 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.787, A:R.787, A:S.800 NAG.9: 1 residues within 4Å: Chain A: N.1179 No protein-ligand interaction detected (PLIP) NAG.10: 4 residues within 4Å: Chain A: G.212, L.213, S.247, N.249 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Toro, D. et al., Structural Basis of Teneurin-Latrophilin Interaction in Repulsive Guidance of Migrating Neurons. Cell (2020)

Release Date

2020-02-12

Peptides

Teneurin-2: A
Adhesion G protein-coupled receptor L2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Teneurin-2

Adhesion G protein-coupled receptor L2

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