SMTL ID : 6sku.1

Legionella effector AnkX in complex with human Rab1b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 18 residues within 4Å: Chain B: S.18, G.19, V.20, G.21, K.22, S.23, C.24, Y.34, E.36, Y.38, N.122, K.123, D.125, L.126, S.152, A.153, K.154 Ligands: MG.2 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.18, B:G.19, B:G.21, B:K.22, B:S.23, B:S.23, B:C.24, B:E.36, B:N.122, B:K.123, B:K.123, B:A.153, B:K.154 Salt bridges: B:K.22, B:D.125 pi-Stacking: B:Y.34

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: S.23, D.64, T.65 Ligands: GDP.1 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.23, B:D.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ernst, S. et al., Legionellaeffector AnkX displaces the switch II region for Rab1b phosphocholination. Sci Adv (2020)

Release Date

2020-06-10

Peptides

Phosphocholine transferase AnkX: A
Ras-related protein Rab-1B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphocholine transferase AnkX

Ras-related protein Rab-1B