SMTL ID : 6slm.1

Crystal structure of full-length HPV31 E6 oncoprotein in complex with LXXLL peptide of ubiquitin ligase E6AP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, M.331, W.341, R.345 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.66, A:R.67, A:R.67, A:E.154, A:Y.156, A:R.345

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.474, C.477, C.507, C.510 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.474, A:C.477, A:C.507, A:C.510 ZN.3: 4 residues within 4Å: Chain A: C.401, C.404, C.434, C.437 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.401, A:C.404, A:C.434, A:C.437

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: Y.168, A.169, F.170, K.171, Y.172, F.259, E.329 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.169, A:F.170, A:Y.172 GOL.5: 1 residues within 4Å: Chain A: R.515 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.515

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conrady, M.C. et al., Structure of High-Risk Papillomavirus 31 E6 Oncogenic Protein and Characterization of E6/E6AP/p53 Complex Formation. J.Virol. (2020)

Release Date

2020-09-09

Peptides

Maltose/maltodextrin-binding periplasmic protein,Protein E6,Ubiquitin-protein ligase E3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,Protein E6,Ubiquitin-protein ligase E3A