SMTL ID : 6smz.1

Crystal structure of SLA Reductase YihU from E. Coli in complex with NADH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 20 residues within 4Å: Chain A: I.7, G.8, L.9, G.10, Q.11, M.12, G.13, F.30, D.31, V.32, M.64, L.65, P.66, L.70, V.74, S.95, T.96, V.121, R.123 Chain C: F.233 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:L.9, A:Q.11, A:Q.11, A:M.12, A:G.13, A:V.32, A:L.65, A:T.96 Water bridges: A:G.10, A:N.33, A:P.66, A:T.96, A:S.125, A:S.125, C:K.240 NAD.2: 20 residues within 4Å: Chain B: I.7, G.8, L.9, G.10, Q.11, M.12, G.13, F.30, D.31, V.32, M.64, L.65, P.66, L.70, V.74, S.95, T.96, V.121, R.123 Chain D: L.237 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:L.9, B:Q.11, B:M.12, B:G.13, B:V.32, B:L.65, B:T.96 Water bridges: B:G.10, B:N.33, B:T.96, B:S.125, B:S.125, D:A.232, D:K.240 NAD.3: 23 residues within 4Å: Chain A: A.232, F.233 Chain C: I.7, G.8, L.9, G.10, Q.11, M.12, G.13, F.30, D.31, V.32, N.33, M.64, L.65, P.66, L.70, V.74, S.95, T.96, V.121, R.123, K.171 11 PLIP interactions: 10 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Q.11, C:M.12, C:G.13, C:V.32, C:L.65, C:T.96 Water bridges: C:G.10, C:N.33, C:N.33, C:S.125, A:A.232 NAD.4: 19 residues within 4Å: Chain D: L.9, G.10, Q.11, M.12, G.13, F.30, D.31, V.32, N.33, M.64, L.65, P.66, L.70, V.74, S.95, T.96, V.121, R.123, K.171 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:L.9, D:L.9, D:Q.11, D:M.12, D:G.13, D:V.32, D:L.65, D:T.96, D:T.96 Water bridges: D:G.10, D:G.10, D:S.125, D:K.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, M. et al., Dynamic Structural Changes Accompany the Production of Dihydroxypropanesulfonate by Sulfolactaldehyde Reductase. Acs Catalysis (2020)

Release Date

2020-08-12

Peptides

3-sulfolactaldehyde reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

3-sulfolactaldehyde reductase

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