SMTL ID : 6snh.1

Cryo-EM structure of yeast ALG6 in complex with 6AG9 Fab and Dol25-P-Glc

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x LMH: glucosyl-dolichol phosphate(Non-covalent)

LMH.1: 10 residues within 4Å: Chain A: Q.252, M.253, L.255, F.262, P.317, Q.394, H.396, T.399 Chain B: W.106, Y.107 9 PLIP interactions: 2 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:W.106, B:Y.107, A:L.255, A:F.262, A:Q.394 Hydrogen bonds: A:Q.252, A:H.396, A:H.396, A:T.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bloch, J.S. et al., Structure and mechanism of the ER-based glucosyltransferase ALG6. Nature (2020)

Release Date

2020-03-11

Peptides

Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase: A
6AG9 Fab heavy chain: B
6AG9 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
H

C
L

Membrane

We predict this structure to be a membrane protein.
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Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase

6AG9 Fab heavy chain

6AG9 Fab light chain

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