SMTL ID : 6snw.1

Structure of Coxsackievirus A10 complexed with its receptor KREMEN1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x SPH: SPHINGOSINE(Non-covalent)

SPH.1: 15 residues within 4Å: Chain A: I.110, D.111, I.112, F.136, Y.152, Y.154, P.176, V.178, V.191, M.194, Y.200, W.202, N.227, F.232 Chain C: I.24 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:I.110, A:I.112, A:F.136, A:Y.154, A:Y.154, A:Y.154, A:V.178, A:V.191, A:Y.200, A:F.232, C:I.24 Hydrogen bonds: A:D.111, A:D.111, A:I.112, A:N.227

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 6 residues within 4Å: Chain E: T.26, N.28, W.29, P.37, N.65, Y.66 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:W.29, E:P.37 Hydrogen bonds: E:N.65, E:Y.66 NAG.3: 3 residues within 4Å: Chain E: F.40, N.42, E.63 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.42, E:E.63, E:E.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Hand-foot-and-mouth disease virus receptor KREMEN1 binds the canyon of Coxsackie Virus A10. Nat Commun (2020)

Release Date

2020-01-15

Peptides

Capsid protein VP1: A
Coxsackievirus VP2: B
Capsid protein VP3: C
Coxsackievirus VP4: D
Kremen protein 1: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Capsid protein VP1

Coxsackievirus VP2

Capsid protein VP3

Coxsackievirus VP4

Kremen protein 1

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