SMTL ID : 6sp5.2 (1 other biounit)

Structure of hyperstable haloalkane dehalogenase variant DhaA115

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.1: 5 residues within 4Å: Chain A: D.74, L.75, D.76, E.198, R.202 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.74, A:D.76, A:R.202 Water bridges: A:D.76, A:D.76, A:D.76, A:D.76, A:R.157

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.68, K.72, E.189, P.190, W.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.72, A:K.72, A:E.189

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.3: 2 residues within 4Å: Chain A: H.11, Y.12 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.22 SCN.4: 3 residues within 4Å: Chain A: F.8, P.51, A.54 No protein-ligand interaction detected (PLIP) SCN.5: 7 residues within 4Å: Chain A: N.39, D.104, W.105, F.166, F.203, P.204, L.207 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markova, K. et al., Decoding the intricate network of molecular interactions of a hyperstable engineered biocatalyst. Chem Sci (2020)

Release Date

2020-11-18

Peptides

Haloalkane dehalogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Haloalkane dehalogenase

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