SMTL ID : 6sq4.1

Crystal structure of mouse PRMT6 in complex with inhibitor U2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: K.215, Q.216 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain B: E.260, R.263 Ligand excluded by PLIP

2 x GJV: 9-(7-{[amino(iminio)methyl]amino}-5,6,7-trideoxy-beta-D-ribo-heptofuranosyl)-9H-purin-6-amine(Non-covalent)

GJV.2: 25 residues within 4Å: Chain A: Y.50, Y.54, H.60, M.63, G.93, A.94, G.95, V.114, E.115, A.116, S.117, I.119, G.141, P.142, V.143, E.144, E.158, W.159, M.160, G.161, E.167, M.169, S.172, W.321, R.354 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.54 Hydrogen bonds: A:Y.54, A:G.93, A:E.115, A:A.116, A:S.117, A:S.117, A:V.143, A:E.144, A:E.158, A:M.160 Water bridges: A:W.321, A:R.354 Salt bridges: A:E.158, A:E.167 GJV.4: 25 residues within 4Å: Chain B: Y.50, Y.51, Y.54, H.60, G.93, A.94, G.95, V.114, E.115, A.116, S.117, I.119, G.141, P.142, V.143, E.144, E.158, W.159, M.160, G.161, E.167, M.169, S.172, W.321, R.354 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.54 Hydrogen bonds: B:Y.54, B:G.93, B:A.116, B:S.117, B:S.117, B:V.143, B:E.144, B:E.158, B:M.160 Water bridges: B:W.321, B:R.354 Salt bridges: B:E.158, B:E.167 pi-Stacking: B:Y.51, B:Y.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal structure of mouse PRMT6 in complex with inhibitors. To be published

Release Date

2020-09-30

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 6

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