SMTL ID : 6sqk.1

Crystal structure of mouse PRMT6 with modified H7-4 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

2 x GLY- LTE- GLY: H4-7(Non-covalent)

GLY-LTE-GLY.1: 31 residues within 4Å: Chain B: Y.52, Y.53, C.55, Y.56, V.61, H.62, M.65, R.71, G.95, G.97, V.116, E.117, A.118, S.119, I.121, G.143, P.144, V.145, E.146, E.160, W.161, M.162, G.163, Y.164, H.168, E.169, M.171, S.174, H.322, W.323, R.356 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.56, B:V.61 Hydrogen bonds: B:Y.56, B:G.97, B:E.117, B:A.118, B:V.145, B:E.146, B:E.160, B:H.168, B:E.169, B:H.322, B:W.323 Water bridges: B:E.169 Salt bridges: B:E.160, B:E.169 pi-Stacking: B:Y.53 GLY-LTE-GLY.2: 35 residues within 4Å: Chain A: L.51, Y.52, Y.53, C.55, Y.56, V.61, H.62, E.64, M.65, R.71, G.95, G.97, V.116, E.117, A.118, S.119, I.121, G.143, P.144, V.145, E.146, E.160, W.161, M.162, G.163, Y.164, H.168, E.169, M.171, S.174, H.322, W.323, R.356, E.379, D.380 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:Y.56, A:V.61 Hydrogen bonds: A:Y.56, A:Y.56, A:Y.56, A:E.64, A:E.64, A:G.97, A:E.117, A:E.117, A:A.118, A:V.145, A:E.146, A:E.160, A:Y.164, A:H.168, A:E.169, A:H.322, A:W.323, A:D.380 Water bridges: A:Y.164, A:R.356, A:R.356 Salt bridges: A:E.160, A:E.169 pi-Stacking: A:Y.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Crystal structure of mouse PRMT6 in complex with inhibitors. To Be Published

Release Date

2020-09-30

Peptides

Protein arginine N-methyltransferase 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 6