SMTL ID : 6sqp.2 (1 other biounit)

Crystal structure of Cat MDM2-S429E RING domain homodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.12, C.15, C.35, C.38 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:C.35, A:C.38 ZN.2: 4 residues within 4Å: Chain A: H.26, H.31, C.49, C.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.26, A:H.31, A:C.49, A:C.52 ZN.4: 5 residues within 4Å: Chain B: C.15, C.18, R.21, C.38, C.41 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.15, B:C.18, B:C.38, B:C.41 ZN.5: 4 residues within 4Å: Chain B: H.29, H.34, C.52, C.55 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.29, B:H.34, B:C.52, B:C.55

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.6: 2 residues within 4Å: Chain B: R.21, T.40 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Magnussen, H.M. et al., Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain. Nat Commun (2020)

Release Date

2020-05-06

Peptides

E3 ubiquitin-protein ligase Mdm2: A
E3 ubiquitin-protein ligase Mdm2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

E3 ubiquitin-protein ligase Mdm2

E3 ubiquitin-protein ligase Mdm2

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