SMTL ID : 6stg.2 (1 other biounit)

Human Rab8a phosphorylated at Ser111 in complex with GPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain A: D.12, S.13, G.14, V.15, G.16, K.17, T.18, C.19, F.29, N.30, S.31, I.34, S.35, T.36, T.60, A.61, G.62, N.117, K.118, D.120, V.121, S.147, A.148, K.149 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.13, A:G.14, A:V.15, A:G.16, A:K.17, A:K.17, A:T.18, A:C.19, A:N.30, A:I.34, A:T.36, A:T.60, A:G.62, A:N.117, A:K.118, A:S.147, A:A.148, A:K.149 Salt bridges: A:D.120 pi-Stacking: A:F.29, A:F.29

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.18, I.34, T.36, D.59 Ligands: GNP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.18, A:T.36

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.3: 3 residues within 4Å: Chain A: E.104, H.105, S.107 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vieweg, S. et al., PINK1-dependent phosphorylation of Serine111 within the SF3 motif of Rab GTPases impairs effector interactions and LRRK2-mediated phosphorylation at Threonine72. Biochem.J. (2020)

Release Date

2020-04-22

Peptides

Ras-related protein Rab-8A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ras-related protein Rab-8A

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