- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 3 x OLA: OLEIC ACID(Non-covalent)
OLA.2: 5 residues within 4Å:- Chain A: R.17, F.81, S.84, S.85
- Ligands: LFA.7
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.81, A:F.81
- Hydrogen bonds: A:S.84
- Salt bridges: A:R.17
OLA.25: 10 residues within 4Å:- Chain B: G.193, Y.196, G.197, I.200, S.201, L.204, F.205, S.208, L.236
- Ligands: OLC.24
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.200, B:I.200, B:L.204, B:F.205, B:F.205, B:L.236
OLA.26: 4 residues within 4Å:- Chain A: I.174, P.183
- Chain B: I.60
- Ligands: LFA.27
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:I.60, A:I.174, A:P.183
- Water bridges: A:G.184
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.4: 4 residues within 4Å:- Chain A: N.14, R.17, V.21
- Ligands: LFA.12
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.21
- Hydrogen bonds: A:N.14, A:R.17
OLC.5: 17 residues within 4Å:- Chain A: G.157, D.158, L.159, L.160, W.163, F.164, I.167, V.171
- Chain B: S.109, F.135, A.139, W.146, K.150
- Ligands: LFA.17, LFA.19, LFA.27, LFA.34
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:L.160, A:W.163, A:F.164, A:I.167, A:V.171, B:A.139, B:W.146
- Hydrogen bonds: A:G.157, A:L.159, B:K.150, B:K.150
OLC.23: 9 residues within 4Å:- Chain B: W.173, I.174, V.180, I.181, Y.196, I.199, I.200, F.203
- Ligands: LFA.29
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:I.174, B:V.180, B:Y.196, B:I.199, B:I.200, B:F.203
- Water bridges: B:V.180, B:I.181, B:D.188, B:V.189
OLC.24: 9 residues within 4Å:- Chain B: P.192, G.193, F.194, G.197, S.201, F.205, V.239, Q.247
- Ligands: OLA.25
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:F.205, B:V.239
- Hydrogen bonds: B:G.193
- Water bridges: B:F.194
- 23 x LFA: EICOSANE(Non-covalent)
LFA.6: 3 residues within 4Å:- Chain A: S.242, W.246
- Ligands: LFA.15
Ligand excluded by PLIPLFA.7: 7 residues within 4Å:- Chain A: L.24, M.27, L.78, F.81, S.85
- Ligands: OLA.2, LFA.13
Ligand excluded by PLIPLFA.8: 3 residues within 4Å:- Chain A: I.60
- Chain B: P.183
- Ligands: LFA.9
Ligand excluded by PLIPLFA.9: 5 residues within 4Å:- Chain A: M.41, L.132, F.135
- Ligands: LFA.8, LFA.10
Ligand excluded by PLIPLFA.10: 8 residues within 4Å:- Chain A: S.109, F.135, G.136, A.139, W.146
- Chain B: I.167, V.171
- Ligands: LFA.9
Ligand excluded by PLIPLFA.11: 2 residues within 4Å:- Chain A: V.117
- Ligands: LFA.18
Ligand excluded by PLIPLFA.12: 4 residues within 4Å:- Chain A: I.18, F.22, L.25
- Ligands: OLC.4
Ligand excluded by PLIPLFA.13: 6 residues within 4Å:- Chain A: M.27, L.67, L.71, G.74, L.75
- Ligands: LFA.7
Ligand excluded by PLIPLFA.14: 5 residues within 4Å:- Chain A: A.29, V.30, A.245, W.246, F.249
Ligand excluded by PLIPLFA.15: 6 residues within 4Å:- Chain A: G.193, F.194, G.197, S.201, Q.247
- Ligands: LFA.6
Ligand excluded by PLIPLFA.16: 13 residues within 4Å:- Chain A: F.162, W.163, C.166, G.169, I.170, W.173, F.203, F.206, N.207, A.210, L.211, Y.214
- Ligands: RET.21
Ligand excluded by PLIPLFA.17: 7 residues within 4Å:- Chain A: L.159, W.163, C.166, I.167, F.203, N.207
- Ligands: OLC.5
Ligand excluded by PLIPLFA.18: 4 residues within 4Å:- Chain A: L.61, E.62, P.64
- Ligands: LFA.11
Ligand excluded by PLIPLFA.19: 3 residues within 4Å:- Chain A: I.167, I.170
- Ligands: OLC.5
Ligand excluded by PLIPLFA.27: 9 residues within 4Å:- Chain B: M.41, L.61, E.62, P.64, L.131, L.132, F.135
- Ligands: OLC.5, OLA.26
Ligand excluded by PLIPLFA.28: 3 residues within 4Å:- Chain B: A.68, L.71, V.117
Ligand excluded by PLIPLFA.29: 6 residues within 4Å:- Chain B: W.163, C.166, I.167, I.170
- Ligands: OLC.23, LFA.33
Ligand excluded by PLIPLFA.30: 4 residues within 4Å:- Chain B: I.18, V.21, F.22, L.25
Ligand excluded by PLIPLFA.31: 3 residues within 4Å:- Chain B: L.67, L.71
- Ligands: LFA.32
Ligand excluded by PLIPLFA.32: 4 residues within 4Å:- Chain B: L.24, L.78, F.81
- Ligands: LFA.31
Ligand excluded by PLIPLFA.33: 14 residues within 4Å:- Chain B: F.162, W.163, C.166, G.169, I.170, W.173, F.203, F.206, N.207, A.210, L.211, Y.214
- Ligands: LFA.29, RET.37
Ligand excluded by PLIPLFA.34: 2 residues within 4Å:- Chain B: W.146
- Ligands: OLC.5
Ligand excluded by PLIPLFA.35: 2 residues within 4Å:- Chain B: W.246, F.249
Ligand excluded by PLIP- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.20: 3 residues within 4Å:- Chain A: K.98, Q.100, K.150
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.100
- Salt bridges: A:K.98, A:K.150
SO4.36: 3 residues within 4Å:- Chain B: K.98, Q.100, K.150
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.100
- Salt bridges: B:K.98, B:K.150
- 2 x RET: RETINAL(Covalent)
RET.21: 17 residues within 4Å:- Chain A: W.105, Y.108, S.111, S.112, M.115, M.141, I.142, G.145, F.162, G.165, C.166, F.206, F.209, A.210, Q.213, K.241
- Ligands: LFA.16
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:W.105, A:W.105, A:Y.108, A:Y.108, A:I.142, A:F.162, A:F.162, A:F.206, A:F.206, A:F.209, A:F.209, A:F.209, A:F.209, A:F.209, A:A.210, A:K.241
RET.37: 17 residues within 4Å:- Chain B: W.105, Y.108, S.111, S.112, M.115, M.141, I.142, G.145, F.162, G.165, C.166, F.206, F.209, A.210, Q.213, K.241
- Ligands: LFA.33
15 PLIP interactions:15 interactions with chain B- Hydrophobic interactions: B:W.105, B:W.105, B:Y.108, B:Y.108, B:I.142, B:F.162, B:F.206, B:F.206, B:F.209, B:F.209, B:F.209, B:F.209, B:F.209, B:A.210, B:K.241
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovalev, K. et al., High-resolution structural insights into the heliorhodopsin family. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2019-12-11
- Peptides
- 48C12 heliorhodopsin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 3 x OLA: OLEIC ACID(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 23 x LFA: EICOSANE(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 2 x RET: RETINAL(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kovalev, K. et al., High-resolution structural insights into the heliorhodopsin family. Proc.Natl.Acad.Sci.USA (2020)
- Release Date
- 2019-12-11
- Peptides
- 48C12 heliorhodopsin: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
XB
A - Membrane
-
We predict this structure to be a membrane protein.