SMTL ID : 6sua.2 (1 other biounit)

Structure of the high affinity engineered lipocalin C1B12 in complex with the mouse CD98 heavy chain ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

hetero-1-1-mer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.12, L.13, K.124, E.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.13 Salt bridges: A:K.124 SO4.2: 3 residues within 4Å: Chain B: T.211, T.213, R.216 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.213, B:T.213, B:R.216 Salt bridges: B:R.216 SO4.3: 6 residues within 4Å: Chain B: E.334, R.335, S.336, N.361, E.362, Y.364 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.334, B:R.335, B:S.336, B:E.362 Salt bridges: B:R.335 SO4.4: 4 residues within 4Å: Chain B: W.19, K.22, K.58, H.104 5 PLIP interactions: 5 interactions with chain B Water bridges: B:Q.17, B:W.19 Salt bridges: B:K.22, B:K.58, B:H.104 SO4.5: 3 residues within 4Å: Chain B: P.248, D.249, H.250 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.249, B:H.250 Salt bridges: B:H.250 SO4.6: 3 residues within 4Å: Chain B: R.375, S.376, R.378 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.376 Water bridges: B:S.419 Salt bridges: B:R.378

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deuschle, F.C. et al., Design of a surrogate Anticalin protein directed against CD98hc for preclinical studies in mice. Protein Sci. (2020)

Release Date

2020-06-17

Peptides

Neutrophil gelatinase-associated lipocalin: A
4F2 cell-surface antigen heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Neutrophil gelatinase-associated lipocalin

4F2 cell-surface antigen heavy chain

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