SMTL ID : 6sv3.1

Structure of coproheme-LmCpfC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x FEC: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEX(Non-covalent)

FEC.1: 24 residues within 4Å: Chain A: Y.12, G.13, T.14, P.15, Y.24, Y.25, I.28, R.29, L.42, R.45, Y.46, S.53, L.55, A.113, S.120, Y.124, H.182, L.184, G.223, W.229, F.257, H.261, L.262, E.263 26 PLIP interactions: 26 interactions with chain A, Hydrophobic interactions: A:Y.12, A:Y.12, A:Y.25, A:I.28, A:L.42, A:L.55, A:A.113, A:H.182, A:W.229, A:F.257, A:E.263 Hydrogen bonds: A:T.14, A:Y.24, A:H.30, A:S.53, A:L.262 Water bridges: A:Y.12, A:R.45, A:Y.124, A:K.224, A:K.224 Salt bridges: A:R.29, A:R.45 pi-Stacking: A:Y.12, A:H.182 Metal complexes: A:Y.12

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.27, K.86, F.91, E.93, R.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.127, A:R.127, A:R.127 Water bridges: A:D.27, A:D.27 GOL.3: 5 residues within 4Å: Chain A: S.221, E.222, Q.235, D.267, E.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.222, A:D.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofbauer, S. et al., Crystal structures and calorimetry reveal catalytically relevant binding mode of coproporphyrin and coproheme in coproporphyrin ferrochelatase. Febs J. (2020)

Release Date

2019-12-18

Peptides

Ferrochelatase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ferrochelatase

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