SMTL ID : 6svy.1

Crystal structure of Neprilysin in complex with Sampatrilat-ASP.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.533, H.537, E.596, H.661 Ligands: D0W.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.533, A:H.537, A:E.596, A:E.596

1 x D0W: Sampatrilat-Asp(Non-covalent)

D0W.2: 21 residues within 4Å: Chain A: R.52, G.54, F.56, D.57, R.60, N.492, A.493, F.494, Y.495, I.508, V.530, H.533, E.534, H.537, E.596, W.643, Y.647, V.660, H.661, R.667 Ligands: ZN.1 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:F.56, A:F.56, A:F.56, A:F.56, A:V.530, A:W.643, A:W.643, A:V.660 Hydrogen bonds: A:R.52, A:N.492, A:N.492, A:N.492, A:R.667, A:R.667 Water bridges: A:N.55, A:R.60, A:R.60, A:H.661, A:H.661 Salt bridges: A:R.52, A:R.60, A:H.533, A:H.537, A:H.661, A:H.661 pi-Cation interactions: A:R.52

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.94, A.97, D.454 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.94 NAG.4: 3 residues within 4Å: Chain A: N.234, A.235, K.303 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.234, A:K.303 NAG.5: 6 residues within 4Å: Chain A: T.132, K.135, K.268, N.274, N.277, E.278 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.135, A:E.278 NAG.6: 4 residues within 4Å: Chain A: Y.573, G.576, N.577, H.587 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.577

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, U. et al., Molecular Basis for Omapatrilat and Sampatrilat Binding to Neprilysin-Implications for Dual Inhibitor Design with Angiotensin-Converting Enzyme. J.Med.Chem. (2020)

Release Date

2020-05-13

Peptides

Neprilysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neprilysin

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