SMTL ID : 6swo.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH iBET-BD1 (GSK778)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x LWB: 4-[2-(methoxymethyl)-1-[(1~{R})-1-phenylethyl]-8-[[(3~{S})-pyrrolidin-3-yl]methoxy]imidazo[4,5-c]quinolin-7-yl]-3,5-dimethyl-1,2-oxazole(Non-covalent)

LWB.1: 11 residues within 4Å: Chain A: W.30, P.31, F.32, L.41, L.43, C.85, Y.88, N.89, H.93, V.95, M.98 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.30, A:W.30, A:P.31, A:P.31, A:F.32, A:L.41, A:L.41, A:L.43, A:Y.88, A:V.95 Hydrogen bonds: A:N.89 Water bridges: A:C.85 pi-Stacking: A:W.30

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.3: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gilan, O. et al., Selective targeting of BD1 and BD2 of the BET proteins in cancer and immunoinflammation. Science (2020)

Release Date

2020-04-01

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 2

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