SMTL ID : 6swu.2 (2 other biounits)

Crystal structure of the TPR domain of KLC1 in complex with an engineered high-affinity cargo peptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: E.157, Y.160, Y.161 No protein-ligand interaction detected (PLIP) EDO.2: 3 residues within 4Å: Chain A: K.70, K.72, D.73 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.73 EDO.3: 5 residues within 4Å: Chain A: T.171, K.172, L.173, G.174, P.175 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.172 EDO.4: 4 residues within 4Å: Chain A: N.79, Y.107, E.115, L.119 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.107 EDO.5: 8 residues within 4Å: Chain A: K.268, M.291 Chain B: A.24, S.25, G.27, Y.29, L.63, D.67 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.25, A:K.268 EDO.6: 3 residues within 4Å: Chain B: T.46, S.47, G.48 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.47 EDO.7: 5 residues within 4Å: Chain B: T.171, K.172, L.173, G.174, P.175 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cross, J.A. et al., Fragment-linking peptide design yields a high-affinity ligand for microtubule-based transport. Cell Chem Biol (2021)

Release Date

2020-09-30

Peptides

Kinesin light chain 1,Kinesin light chain 1,TPR domain of kinesin light chain 1 in complex with an engineered high-affinity cargo peptide of sequence TVFTTEDIYEWDDSAI: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Kinesin light chain 1,Kinesin light chain 1,TPR domain of kinesin light chain 1 in complex with an engineered high-affinity cargo peptide of sequence TVFTTEDIYEWDDSAI

Related Entries With Identical Sequence