SMTL ID : 6syn.1

Crystal structure of Y. pestis penicillin-binding protein 3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: Y.364, K.444, Y.452 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.364, A:K.444, A:Y.452 Water bridges: A:Y.452 ACT.2: 3 residues within 4Å: Chain A: R.184, T.505, M.506 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.184

1 x CB9: (2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid(Covalent)

CB9.3: 13 residues within 4Å: Chain A: S.252, K.255, V.289, S.304, N.306, Y.364, T.440, G.441, T.442, K.444, Y.456, Y.485, Y.486 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.289, A:T.442, A:Y.456, A:Y.485 Hydrogen bonds: A:S.252, A:S.304, A:S.304, A:S.304, A:N.306, A:T.440, A:T.442, A:T.442, A:T.442 Water bridges: A:K.444 Salt bridges: A:K.439, A:K.444 pi-Cation interactions: A:K.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pankov, G., The structure of penicillin-binding protein 3 from Yersinia pestis. To Be Published

Release Date

2020-10-14

Peptides

Peptidoglycan D,D-transpeptidase FtsI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan D,D-transpeptidase FtsI