SMTL ID : 6syp.1

Human DHODH bound to inhibitor IPP/CNRS-A017

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 25 residues within 4Å: Chain A: A.94, A.95, G.96, K.99, G.118, S.119, N.144, Y.146, N.180, N.211, K.254, T.282, N.283, T.284, S.304, G.305, L.308, V.332, G.333, G.334, L.354, Y.355, T.356 Ligands: ORO.2, M0B.4 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:N.144, A:Y.146, A:Y.355 Hydrogen bonds: A:A.95, A:K.99, A:S.119, A:S.119, A:N.180, A:K.254, A:K.254, A:N.283, A:G.305, A:G.334, A:Y.355, A:T.356, A:T.356 Water bridges: A:A.95, A:G.333, A:G.333, A:V.335, A:V.335

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 13 residues within 4Å: Chain A: K.99, N.144, R.145, Y.146, G.147, F.148, N.211, S.214, P.215, N.216, N.283, T.284 Ligands: FMN.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.148 Hydrogen bonds: A:N.144, A:N.144, A:N.144, A:G.147, A:F.148, A:N.211, A:N.216, A:N.283, A:N.283 Water bridges: A:S.214, A:S.214 Salt bridges: A:K.99

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.244, V.246, H.247 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.244, A:H.247

1 x M0B: 2-[4-[2,6-bis(fluoranyl)phenoxy]-5-methyl-3-propan-2-yloxy-pyrazol-1-yl]-5-cyclopropyl-3-fluoranyl-pyridine(Non-covalent)

M0B.4: 15 residues within 4Å: Chain A: P.51, A.54, H.55, L.57, A.58, F.61, T.62, L.66, F.97, V.133, Y.355, L.358, T.359, P.363 Ligands: FMN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:H.55, A:L.57, A:F.61, A:V.133, A:L.358, A:T.359

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kramer, A. et al., Optimization of pyrazolo[1,5-a]pyrimidines lead to the identification of a highly selective casein kinase 2 inhibitor. Eur.J.Med.Chem. (2020)

Release Date

2019-10-09

Peptides

Dihydroorotate dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Dihydroorotate dehydrogenase

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