SMTL ID : 6sz0.1

The glucuronoyl esterase OtCE15A H408A variant from Opitutus terrae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: C.282, H.292, E.294, T.295, D.349 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.292, A:E.294, H2O.3, H2O.7, H2O.8 MG.2: 7 residues within 4Å: Chain A: R.121, L.239, E.240, D.242, V.245, D.246, A.247 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.239, A:D.242, A:V.245, H2O.6

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: R.351, D.376, V.377 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.376, A:V.377 Salt bridges: A:R.351

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: T.63, L.65, G.66, Q.268, D.269 Ligands: EDO.7 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.233, A:R.234, A:R.234, A:Q.268 PEG.5: 7 residues within 4Å: Chain A: T.24, L.25, L.287, K.289, R.290, R.351, L.355 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.24, A:R.290

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: S.256, R.257, K.260, C.282, E.294, I.299, F.303, W.306, W.347 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.257, A:R.257, A:R.257, A:K.260, A:E.294, A:W.347 Water bridges: A:S.256, A:C.282

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.7: 8 residues within 4Å: Chain A: Q.53, A.56, G.61, R.62, T.63, W.264, Q.268 Ligands: PEG.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.62, A:T.63, A:T.63 Water bridges: A:Q.53, A:Q.53 EDO.8: 5 residues within 4Å: Chain A: R.67, R.234, D.237, E.240, R.271 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.237, A:R.271 Water bridges: A:R.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mazurkewich, S. et al., Structural and biochemical studies of the glucuronoyl esteraseOtCE15A illuminate its interaction with lignocellulosic components. J.Biol.Chem. (2019)

Release Date

2019-11-27

Peptides

glucuronoyl esterase OtCE15A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

glucuronoyl esterase OtCE15A

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