SMTL ID : 6sza.1

MoxR AAA-ATPase RavA, C2-symmetric closed ring conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, M.189, E.196 Chain F: R.170, D.250, R.251, K.254 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:Y.23, A:Y.23, A:G.49, A:I.50, A:A.51, A:K.52, A:S.53, A:E.196 Salt bridges: A:K.52, F:R.170, F:R.251, F:R.251 ADP.2: 17 residues within 4Å: Chain A: R.170, D.250, R.251, K.254 Chain B: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, M.189, E.196 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Y.23, B:Y.23, B:G.49, B:I.50, B:A.51, B:K.52, B:S.53, B:R.57, B:E.196 Salt bridges: B:K.52, A:R.170, A:R.251, A:R.251 ADP.3: 18 residues within 4Å: Chain C: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, V.180, M.189, E.196 Chain E: R.170, D.250, R.251, K.254 13 PLIP interactions: 10 interactions with chain C, 3 interactions with chain E Hydrogen bonds: C:Y.23, C:Y.23, C:G.49, C:I.50, C:A.51, C:K.52, C:S.53, C:R.57, C:E.196 Salt bridges: C:K.52, E:R.170, E:R.251, E:R.251 ADP.4: 17 residues within 4Å: Chain D: R.170, D.250, R.251, K.254 Chain E: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, M.189, E.196 13 PLIP interactions: 10 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:Y.23, E:Y.23, E:G.49, E:I.50, E:A.51, E:K.52, E:S.53, E:R.57, E:E.196 Salt bridges: E:K.52, D:R.170, D:R.251, D:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jessop, M. et al., Structural insights into ATP hydrolysis by the MoxR ATPase RavA and the LdcI-RavA cage-like complex. Commun Biol (2020)

Release Date

2020-02-19

Peptides

RavA: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
D

D
F

E
E

F
C

RavA

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