SMTL ID : 6szb.1

MoxR AAA-ATPase RavA, spiral open ring conformation

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, V.180, M.189, E.196 Chain F: R.170, D.250, R.251, K.254 12 PLIP interactions: 3 interactions with chain F, 9 interactions with chain A Salt bridges: F:R.170, F:R.251, F:R.251, A:K.52 Hydrogen bonds: A:Y.23, A:Y.23, A:G.49, A:I.50, A:A.51, A:K.52, A:S.53, A:E.196 ADP.2: 18 residues within 4Å: Chain A: R.170, D.250, R.251, K.254 Chain B: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, V.180, M.189, E.196 13 PLIP interactions: 4 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:D.250, B:Y.23, B:Y.23, B:G.49, B:I.50, B:A.51, B:K.52, B:S.53, B:E.196 Salt bridges: A:R.170, A:R.251, A:R.251, B:K.52 ADP.3: 18 residues within 4Å: Chain B: R.170, D.250, R.251, K.254 Chain C: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, V.180, M.189, E.196 13 PLIP interactions: 5 interactions with chain B, 8 interactions with chain C Hydrogen bonds: B:D.250, B:K.254, C:Y.23, C:Y.23, C:G.49, C:I.50, C:A.51, C:K.52, C:S.53 Salt bridges: B:R.170, B:R.251, B:R.251, C:K.52 ADP.4: 18 residues within 4Å: Chain C: R.170, D.250, R.251, K.254 Chain D: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, V.180, M.189, E.196 13 PLIP interactions: 9 interactions with chain D, 4 interactions with chain C Hydrogen bonds: D:Y.23, D:Y.23, D:G.49, D:I.50, D:A.51, D:K.52, D:S.53, D:R.57, C:D.250 Salt bridges: D:K.52, C:R.170, C:R.251, C:R.251 ADP.5: 18 residues within 4Å: Chain E: R.170, D.250, R.251, K.254 Chain F: G.21, L.22, Y.23, R.25, P.48, G.49, I.50, A.51, K.52, S.53, L.54, R.57, M.189, E.196 12 PLIP interactions: 9 interactions with chain F, 3 interactions with chain E Hydrogen bonds: F:Y.23, F:Y.23, F:G.49, F:I.50, F:A.51, F:K.52, F:S.53, F:R.57 Salt bridges: F:K.52, E:R.170, E:R.251, E:R.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jessop, M. et al., Structural insights into ATP hydrolysis by the MoxR ATPase RavA and the LdcI-RavA cage-like complex. Commun Biol (2020)

Release Date

2020-02-19

Peptides

RavA + Mg-ADP: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
C

C
B

D
A

E
F

F
E

RavA + Mg-ADP

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