- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
F3S.2: 13 residues within 4Å:- Chain A: I.190, T.230, C.234, F.239, W.246, P.247, C.254, Y.255, G.256, C.257, N.258
- Chain B: K.211, Q.216
3 PLIP interactions:3 interactions with chain A,- Metal complexes: A:C.234, A:C.254, A:C.257
F3S.8: 13 residues within 4Å:- Chain C: I.190, T.230, C.234, F.239, W.246, P.247, C.254, Y.255, G.256, C.257, N.258
- Chain D: K.211, Q.216
3 PLIP interactions:3 interactions with chain C,- Metal complexes: C:C.234, C:C.254, C:C.257
- 2 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
FCO.4: 13 residues within 4Å:- Chain B: C.64, T.67, H.68, A.477, P.478, K.479, L.482, V.500, P.501, S.502, C.546, C.549
- Ligands: NI.5
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.479, B:S.502
- Metal complexes: B:C.64, B:C.549
FCO.11: 13 residues within 4Å:- Chain D: C.64, T.67, H.68, A.477, P.478, K.479, L.482, V.500, P.501, S.502, C.546, C.549
- Ligands: NI.12
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:K.479, D:S.502
- Metal complexes: D:C.64, D:C.549
- 2 x NI: NICKEL (II) ION(Non-covalent)
NI.5: 5 residues within 4Å:- Chain B: C.61, C.64, C.546, C.549
- Ligands: FCO.4
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.61, B:C.64, B:C.546, B:C.549, H2O.21
NI.12: 5 residues within 4Å:- Chain D: C.61, C.64, C.546, C.549
- Ligands: FCO.11
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:C.61, D:C.64, D:C.546, D:C.549, H2O.45
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain B: E.42, Q.497, A.498, H.552
6 PLIP interactions:3 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:E.42, B:A.498, B:H.552, H2O.10, H2O.10, H2O.10
MG.13: 4 residues within 4Å:- Chain D: E.42, Q.497, A.498, H.552
6 PLIP interactions:3 interactions with chain D, 3 Ligand-Water interactions- Metal complexes: D:E.42, D:A.498, D:H.552, H2O.34, H2O.35, H2O.35
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.10: 4 residues within 4Å:- Chain C: G.210, D.211, E.212
- Ligands: SO4.15
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.212
- Water bridges: C:G.210
SO4.15: 2 residues within 4Å:- Chain D: H.455
- Ligands: SO4.10
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Water bridges: C:G.210, C:R.215
- Salt bridges: D:H.455
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beaton, S.E. et al., Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine. To Be Published
- Release Date
- 2020-10-14
- Peptides
- Hydrogenase-2 small chain: AC
Hydrogenase-2 large chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SSSC
TTTB
LLLD
MMM
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- hetero-2-2-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 2 x FCO: CARBONMONOXIDE-(DICYANO) IRON(Non-covalent)
- 2 x NI: NICKEL (II) ION(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Beaton, S.E. et al., Hydrogen activation by NiFe-hydrogenases - consolidating the role of the pendant arginine. To Be Published
- Release Date
- 2020-10-14
- Peptides
- Hydrogenase-2 small chain: AC
Hydrogenase-2 large chain: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
SSSC
TTTB
LLLD
MMM