SMTL ID : 6t0l.1

Crystal structure of CYP124 in complex with inhibitor compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: M.117, I.118, H.125, R.129, F.136, I.183, L.270, L.271, A.274, G.275, T.278, T.279, P.321, V.322, M.325, R.327, Y.350, G.377, F.378, G.379, A.383, H.384, C.386, L.387, G.388, A.392 Ligands: M8N.2 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:I.118, A:F.136, A:I.183, A:L.270, A:A.274, A:P.321, A:V.322, A:Y.350, A:F.378, A:L.387, A:A.392 Water bridges: A:R.327, A:Y.350, A:Y.350 Salt bridges: A:H.125, A:R.129, A:R.327, A:H.384 Metal complexes: A:C.386

1 x M8N: ~{N}-[[[2-methyl-4-(3-methylbutyl)phenyl]amino]methyl]hydroxylamine(Non-covalent)

M8N.2: 11 residues within 4Å: Chain A: I.101, F.114, I.118, L.205, L.270, V.273, A.274, T.278, F.423, I.424 Ligands: HEM.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.101, A:F.114, A:I.118, A:L.205, A:L.270, A:V.273, A:F.423, A:I.424 Hydrogen bonds: A:T.278 Water bridges: A:A.274, A:T.278

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: A.361, D.362, D.367, A.369, R.370, N.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.362, A:N.371 Water bridges: A:A.369 PG4.5: 1 residues within 4Å: Chain A: K.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.339

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain A: D.83, D.84, R.336 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.84

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: R.90, G.381, G.382, F.385 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.382

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 1 residues within 4Å: Chain A: R.336 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varaksa, T. et al., Metabolic Fate of Human Immunoactive Sterols in Mycobacterium tuberculosis. J.Mol.Biol. (2021)

Release Date

2020-10-14

Peptides

CYP124 in complex with inhibitor compound 5': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CYP124 in complex with inhibitor compound 5'

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