SMTL ID : 6t1j.1

Crystal structure of MLLT1 (ENL) YEATS domain in complexed with piperazine-urea derivative 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: F.100, T.101, R.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.101, A:R.118, A:R.118 EDO.2: 2 residues within 4Å: Chain A: E.93, E.94 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.93, A:E.94 EDO.3: 8 residues within 4Å: Chain A: V.9, R.10, C.42, I.44, F.47, A.138, G.139, G.140 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.10 EDO.4: 2 residues within 4Å: Chain A: C.42, D.43 No protein-ligand interaction detected (PLIP) EDO.5: 2 residues within 4Å: Chain A: L.122, T.123 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.123 EDO.6: 3 residues within 4Å: Chain A: K.50, R.63, V.65 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.63, A:R.63 EDO.7: 4 residues within 4Å: Chain A: I.82, D.103, L.104, F.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.104

1 x M7T: ~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]-4-thiophen-2-ylcarbonyl-piperazine-1-carboxamide(Non-covalent)

M7T.8: 11 residues within 4Å: Chain A: F.28, H.56, S.58, F.59, P.60, S.76, G.77, Y.78, A.79, G.80, F.81 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.28, A:Y.78, A:A.79, A:F.81 Hydrogen bonds: A:S.58, A:S.58, A:Y.78, A:A.79 pi-Stacking: A:H.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, X. et al., Structural Insights into Interaction Mechanisms of Alternative Piperazine-urea YEATS Domain Binders in MLLT1. Acs Med.Chem.Lett. (2019)

Release Date

2019-11-06

Peptides

Protein ENL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ENL

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