SMTL ID : 6t1s.1

PPAR mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x EDK: (2~{S})-3-[4-[2-[methyl(pyridin-2-yl)amino]ethoxy]phenyl]-2-[[2-(phenylcarbonyl)phenyl]amino]propanoic acid(Non-covalent)

EDK.1: 29 residues within 4Å: Chain A: I.64, I.83, S.84, G.86, C.87, Q.88, R.90, S.91, H.125, I.128, Y.129, L.132, V.141, L.142, I.143, S.144, M.150, L.155, L.158, F.162, F.165, M.166, K.169, H.251, L.255, I.258, L.267, L.271, Y.275 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.83, A:Q.88, A:Y.129, A:I.143, A:F.162, A:F.165, A:L.267 Hydrogen bonds: A:S.91, A:H.251, A:Y.275, A:Y.275 Water bridges: A:S.144 Salt bridges: A:H.125, A:H.251 pi-Stacking: A:F.165 EDK.4: 29 residues within 4Å: Chain B: I.64, I.83, S.84, G.86, C.87, Q.88, R.90, S.91, H.125, I.128, Y.129, L.132, V.141, L.142, I.143, S.144, M.150, L.155, L.158, F.162, F.165, M.166, K.169, H.251, L.255, I.258, L.267, L.271, Y.275 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:I.83, B:Q.88, B:Y.129, B:I.143, B:F.162, B:F.165, B:L.267 Hydrogen bonds: B:S.91, B:H.251, B:Y.275, B:Y.275 Water bridges: B:S.144 Salt bridges: B:H.125, B:H.251 pi-Stacking: B:F.165

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.21, A.33, D.182, D.183, S.184 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.21, A:D.183, A:S.184, A:S.184 Water bridges: A:D.183, A:N.226 SO4.3: 3 residues within 4Å: Chain A: S.231, Q.232 Chain B: Q.217 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.231, A:S.231, A:Q.232, A:Q.232, B:Q.217 SO4.5: 5 residues within 4Å: Chain B: Y.21, A.33, D.182, D.183, S.184 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:Y.21, B:D.183, B:S.184, B:S.184 Water bridges: B:D.182, B:D.183, B:D.183, B:D.183, B:N.226 SO4.6: 3 residues within 4Å: Chain A: Q.217 Chain B: S.231, Q.232 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.231, B:S.231, B:Q.232, B:Q.232, A:Q.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rochel, N., Structure of PPARg mutant. To Be Published

Release Date

2021-04-14

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Peroxisome proliferator-activated receptor gamma