SMTL ID : 6t3p.1

Human Aldose Reductase Mutant L300A in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.97 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 34 residues within 4Å: Chain A: G.19, T.20, W.21, K.22, D.44, Y.49, K.78, H.111, W.112, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, T.244, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273, C.299 Ligands: 30L.2 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:W.21 Hydrogen bonds: A:T.20, A:W.21, A:W.21, A:D.44, A:D.44, A:W.112, A:N.161, A:Q.184, A:Y.210, A:S.211, A:S.211, A:L.213, A:S.215, A:S.215, A:S.215, A:D.217, A:K.263, A:S.264, A:V.265, A:T.266, A:T.266, A:N.273, A:N.273 Water bridges: A:T.244, A:A.246, A:K.263, A:K.263, A:R.269, A:R.269, A:R.269 Salt bridges: A:K.22, A:K.263, A:R.269 pi-Stacking: A:Y.210 pi-Cation interactions: A:R.269

2 x 30L: {5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid(Non-covalent)

30L.2: 17 residues within 4Å: Chain A: W.21, V.48, Y.49, W.80, H.111, W.112, T.114, F.116, F.123, W.220, C.299, A.300, A.301, C.304, Y.310, P.311 Ligands: NAP.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.21, A:W.80, A:F.123, A:F.123, A:A.301 Hydrogen bonds: A:Y.49, A:W.112 Salt bridges: A:H.111 pi-Stacking: A:W.112, A:W.112 Halogen bonds: A:V.48 30L.3: 8 residues within 4Å: Chain A: W.220, R.297, V.298, A.300, A.301, L.302, T.305, Y.310 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.220, A:A.300 Hydrogen bonds: A:A.300, A:L.302 Water bridges: A:W.220, A:S.303

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.4: 8 residues within 4Å: Chain A: H.47, Q.50, N.51, E.52, N.53, E.54, K.95, D.99 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.53 Water bridges: A:H.47, A:H.47, A:Q.50, A:Q.50, A:E.52, A:E.54, A:K.95, A:K.95, A:K.95, A:K.95 Salt bridges: A:H.47, A:K.95, A:K.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hubert, L.-S. et al., Human Aldose Reductase Mutant L300A in Complex with a Ligand with an IDD Structure ({5-fluoro-2-[(3-nitrobenzyl)carbamoyl]phenoxy}acetic acid). To Be Published

Release Date

2020-11-18

Peptides

Aldo-keto reductase family 1 member B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member B1

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