SMTL ID : 6t3t.1

Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: A.9, G.43, T.44, T.45, L.101, Y.133, K.162 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.44, A:T.44, A:T.45, A:T.45, A:Y.133 Water bridges: A:G.43 Salt bridges: A:K.162 SO4.2: 6 residues within 4Å: Chain B: A.9, G.43, T.44, T.45, Y.133, K.162 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.44, B:T.45, B:T.45 Water bridges: B:G.43, B:N.249 Salt bridges: B:K.162 SO4.3: 8 residues within 4Å: Chain C: A.9, G.43, T.44, T.45, L.101, Y.133, K.162, V.204 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:T.44, C:T.45, C:T.45, C:Y.133 Water bridges: C:G.43, C:T.45, C:T.45, C:Y.133, C:K.162 Salt bridges: C:K.162 SO4.4: 8 residues within 4Å: Chain D: A.9, G.43, T.44, T.45, L.101, Y.133, K.162, V.204 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:T.44, D:T.44, D:T.45, D:T.45, D:T.45, D:Y.133, D:N.249 Water bridges: D:G.43, D:K.162, D:K.162 Salt bridges: D:K.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmitz, R.A. et al., Structure of the 4-hydroxy-tetrahydrodipicolinate synthase from the thermoacidophilic methanotroph Methylacidiphilum fumariolicum SolV and the phylogeny of the aminotransferase pathway. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-05-06

Peptides

4-hydroxy-tetrahydrodipicolinate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

4-hydroxy-tetrahydrodipicolinate synthase