SMTL ID : 6t4w.1

ROR(gamma)t ligand binding domain in complex with 20-alpha-hydroxycholesterol and allosteric ligand Glenmark

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: L.20, H.56, F.110, F.111, E.112 Ligands: HCD.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.19, A:H.56, A:F.110, A:E.112 GOL.2: 6 residues within 4Å: Chain A: Q.82, I.83, L.86, F.231, P.233, L.234 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.82 Water bridges: A:Q.82

1 x MJE: 4-[1-[2,6-bis(chloranyl)phenyl]carbonyl-5-methyl-thieno[3,2-c]pyrazol-3-yl]benzoic acid(Non-covalent)

MJE.3: 22 residues within 4Å: Chain A: W.50, A.54, L.57, T.58, I.61, Q.62, L.86, K.87, M.91, V.213, L.216, Q.217, Q.220, V.227, Q.228, A.229, A.230, F.231, L.234, Y.235, L.238, F.239 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.50, A:T.58, A:I.61, A:L.216, A:V.227, A:L.234, A:L.238, A:F.239, A:F.239 Hydrogen bonds: A:Q.62, A:A.230, A:F.231, A:Y.235

1 x HCD: (3alpha,8alpha)-cholest-5-ene-3,20-diol(Non-covalent)

HCD.4: 17 residues within 4Å: Chain A: Q.19, C.53, H.56, V.94, M.98, F.111, F.121, L.124, L.129, I.130, I.133, F.134, H.212, R.215, L.216, F.219 Ligands: GOL.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.56, A:F.111, A:F.121, A:L.124, A:L.129, A:I.133, A:R.215, A:L.216, A:F.219 Water bridges: A:Q.19, A:R.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.M.J.M. et al., Cooperativity between the orthosteric and allosteric ligand binding sites of ROR gamma t. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-11-18

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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