SMTL ID : 6t62.1

Crystal structure of Acinetobacter baumannii FabG in complex with NADPH at 1.8 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 27 residues within 4Å: Chain A: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, D.59, V.60, R.61, N.86, A.87, G.88, I.89, I.109, H.110, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, I.184, T.186, M.188 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:P.181 Hydrogen bonds: A:G.12, A:S.14, A:S.14, A:S.14, A:R.15, A:I.17, A:T.37, A:D.59, A:V.60, A:N.86, A:G.88, A:K.155, A:I.184, A:T.186, A:T.186 Water bridges: A:G.18, A:S.38, A:N.86, A:N.86, A:N.86, A:H.110 Salt bridges: A:R.15 NAP.2: 28 residues within 4Å: Chain B: G.12, A.13, S.14, R.15, G.16, I.17, A.36, T.37, L.58, D.59, V.60, R.61, N.86, A.87, G.88, I.89, I.109, H.110, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:P.181 Hydrogen bonds: B:G.12, B:S.14, B:S.14, B:S.14, B:R.15, B:I.17, B:T.37, B:T.37, B:D.59, B:V.60, B:N.86, B:G.88, B:K.155, B:I.184, B:I.184 Water bridges: B:G.12, B:G.18, B:S.38, B:N.86 Salt bridges: B:R.15, B:R.15 NAP.3: 27 residues within 4Å: Chain C: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, D.59, V.60, R.61, N.86, A.87, G.88, I.89, I.109, H.110, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, I.184, T.186, M.188 24 PLIP interactions: 24 interactions with chain C Hydrophobic interactions: C:P.181 Hydrogen bonds: C:G.12, C:S.14, C:S.14, C:S.14, C:R.15, C:I.17, C:T.37, C:D.59, C:D.59, C:V.60, C:N.86, C:G.88, C:Y.151, C:K.155, C:I.184, C:T.186 Water bridges: C:G.18, C:S.38, C:N.86, C:N.86, C:N.86, C:H.110 Salt bridges: C:R.15 NAP.4: 28 residues within 4Å: Chain D: G.12, A.13, S.14, R.15, G.16, I.17, A.36, T.37, L.58, D.59, V.60, R.61, N.86, A.87, G.88, I.89, I.109, H.110, I.136, S.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:P.181 Hydrogen bonds: D:G.12, D:S.14, D:S.14, D:S.14, D:R.15, D:I.17, D:T.37, D:D.59, D:D.59, D:V.60, D:N.86, D:G.88, D:Y.151, D:K.155, D:I.184, D:I.184 Water bridges: D:G.12, D:G.18, D:T.37, D:T.37, D:N.86, D:H.110 Salt bridges: D:R.15, D:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vella, P. et al., A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens. Bioorg.Med.Chem. (2020)

Release Date

2020-11-18

Peptides

3-oxoacyl-(Acyl-carrier-protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-(Acyl-carrier-protein) reductase

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