SMTL ID : 6t6x.1

Structure of the Bottromycin epimerase BotH in complex with substrate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x MQW: (4~{R})-2-[(1~{R})-1-[[(2~{S})-2-[[(2~{S})-3-methyl-2-[[(4~{Z},6~{S},9~{S},12~{S})-2,8,11-tris(oxidanylidene)-6,9-di(propan-2-yl)-1,4,7,10-tetrazabicyclo[10.3.0]pentadec-4-en-5-yl]amino]butanoyl]amino]-3-phenyl-propanoyl]amino]-3-oxidanyl-3-oxidanylidene-propyl]-4,5-dihydro-1,3-thiazole-4-carboxylic acid(Non-covalent)

MQW.1: 26 residues within 4Å: Chain A: G.57, V.58, A.59, M.60, F.126, F.127, R.130, C.149, A.150, H.151, V.155, I.157, A.161, V.162, E.165, V.169, Y.177, L.178, H.181, F.182, M.191, L.203, T.207, L.210, R.260, I.261 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.58, A:F.127, A:A.150, A:I.157, A:E.165, A:L.210 Hydrogen bonds: A:V.58, A:F.127, A:E.165, A:E.165, A:R.260 Water bridges: A:A.59, A:I.261 pi-Stacking: A:H.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sikandar, A. et al., The bottromycin epimerase BotH defines a group of atypical alpha / beta-hydrolase-fold enzymes. Nat.Chem.Biol. (2020)

Release Date

2020-07-15

Peptides

BotH: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BotH

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