SMTL ID : 6t77.1

Crystal structure of Klebsiella pneumoniae FabG(NADPH-dependent) NADP-complex at 1.75 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 13 residues within 4Å: Chain A: G.13, A.14, S.15, R.16, A.37, T.38, L.59, N.60, V.61, A.88, G.89, I.90, T.110 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.13, A:S.15, A:S.15, A:T.38, A:T.38, A:N.60, A:V.61, A:G.89 Water bridges: A:G.13, A:R.16, A:R.16, A:I.18, A:S.39, A:N.87, A:T.110 Salt bridges: A:R.16, A:R.16 NAP.2: 24 residues within 4Å: Chain B: G.13, A.14, S.15, R.16, I.18, A.37, T.38, L.59, N.60, V.61, N.87, A.88, G.89, I.90, T.110, I.137, G.138, S.139, Y.152, K.156, P.182, G.183, I.185, T.187 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.182 Hydrogen bonds: B:G.13, B:S.15, B:S.15, B:T.38, B:N.60, B:V.61, B:N.87, B:G.89, B:K.156, B:I.185 Water bridges: B:G.13, B:I.18, B:S.39, B:S.39, B:N.87 Salt bridges: B:R.16, B:R.16 NAP.3: 13 residues within 4Å: Chain C: G.13, A.14, S.15, R.16, A.37, T.38, L.59, N.60, V.61, A.88, G.89, I.90, T.110 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:G.13, C:S.15, C:S.15, C:T.38, C:T.38, C:N.60, C:V.61, C:G.89 Water bridges: C:G.13, C:G.13, C:R.16, C:R.16, C:I.18, C:T.38, C:S.39 Salt bridges: C:R.16, C:R.16 NAP.4: 24 residues within 4Å: Chain D: G.13, A.14, S.15, R.16, I.18, A.37, T.38, L.59, N.60, V.61, N.87, A.88, G.89, I.90, T.110, I.137, G.138, S.139, Y.152, K.156, P.182, G.183, I.185, T.187 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:P.182 Hydrogen bonds: D:G.13, D:S.15, D:S.15, D:T.38, D:N.60, D:V.61, D:N.87, D:G.89, D:Y.152, D:K.156, D:I.185 Water bridges: D:G.13, D:I.18, D:S.39, D:S.39, D:N.87, D:T.110 Salt bridges: D:R.16, D:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vella, P. et al., A FabG inhibitor targeting an allosteric binding site inhibits several orthologs from Gram-negative ESKAPE pathogens. Bioorg.Med.Chem. (2021)

Release Date

2020-11-18

Peptides

3-oxoacyl-ACP reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

3-oxoacyl-ACP reductase