- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: Y.3, Y.5, P.150, H.152
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.5
GOL.3: 4 residues within 4Å:- Chain A: H.152, T.153, H.175
- Ligands: SO4.11
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.153, A:T.153, A:H.175
GOL.4: 3 residues within 4Å:- Chain A: Y.245, L.257
- Ligands: SO4.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.245
GOL.16: 4 residues within 4Å:- Chain B: Y.3, Y.5, P.150, H.152
No protein-ligand interaction detected (PLIP)GOL.17: 4 residues within 4Å:- Chain B: H.152, T.153, H.175
- Ligands: SO4.25
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Y.3, B:T.153, B:T.153, B:H.175
GOL.18: 3 residues within 4Å:- Chain B: Y.245, L.257
- Ligands: SO4.22
No protein-ligand interaction detected (PLIP)- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: K.237, N.238
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: E.22, W.100
Ligand excluded by PLIPCL.19: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.20: 2 residues within 4Å:- Chain B: K.237, N.238
Ligand excluded by PLIPCL.21: 2 residues within 4Å:- Chain B: E.22, W.100
Ligand excluded by PLIP- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.8: 8 residues within 4Å:- Chain A: F.117, R.283, H.392, R.432, G.434, G.435
- Ligands: FAD.1, GOL.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.283, A:G.435
- Water bridges: A:R.283
- Salt bridges: A:H.392, A:R.432
SO4.9: 2 residues within 4Å:- Chain A: R.282, R.283
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:R.283
- Water bridges: A:G.118, A:G.118, A:G.118, A:Q.243, A:R.282, A:D.284
- Salt bridges: A:R.282, A:R.283
SO4.10: 6 residues within 4Å:- Chain A: M.315, H.316, Q.317, G.318, E.319
- Chain B: K.321
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Water bridges: B:G.318, B:K.321
- Salt bridges: B:K.321, A:H.316
- Hydrogen bonds: A:G.318, A:E.319
SO4.11: 4 residues within 4Å:- Chain A: N.154, H.175
- Chain B: G.295
- Ligands: GOL.3
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.295, A:T.153, A:N.154
- Salt bridges: A:H.175
SO4.12: 2 residues within 4Å:- Chain A: R.403, R.405
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.405
- Water bridges: A:R.405
- Salt bridges: A:R.403
SO4.13: 3 residues within 4Å:- Chain A: S.66, K.67, E.68
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.67, A:E.68
SO4.22: 8 residues within 4Å:- Chain B: F.117, R.283, H.392, R.432, G.434, G.435
- Ligands: FAD.15, GOL.18
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.283, B:G.435
- Water bridges: B:R.283
- Salt bridges: B:H.392, B:R.432
SO4.23: 2 residues within 4Å:- Chain B: R.282, R.283
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:R.283
- Water bridges: B:G.118, B:G.118, B:G.118, B:Q.243, B:R.282, B:D.284
- Salt bridges: B:R.282, B:R.283
SO4.24: 6 residues within 4Å:- Chain A: K.321
- Chain B: M.315, H.316, Q.317, G.318, E.319
6 PLIP interactions:3 interactions with chain A, 3 interactions with chain B- Water bridges: A:G.318, A:K.321
- Salt bridges: A:K.321, B:H.316
- Hydrogen bonds: B:G.318, B:E.319
SO4.25: 4 residues within 4Å:- Chain A: G.295
- Chain B: N.154, H.175
- Ligands: GOL.17
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:T.153, B:N.154, A:G.295
- Salt bridges: B:H.175
SO4.26: 2 residues within 4Å:- Chain B: R.403, R.405
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.405
- Water bridges: B:R.405
- Salt bridges: B:R.403
SO4.27: 3 residues within 4Å:- Chain B: S.66, K.67, E.68
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.67, B:E.68
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.14: 5 residues within 4Å:- Chain A: T.394, M.395, G.396, E.422, T.424
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.424
NA.28: 5 residues within 4Å:- Chain B: T.394, M.395, G.396, E.422, T.424
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.396
- Water bridges: B:T.424
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Venskutonyte, R. et al., Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production. Nat Commun (2021)
- Release Date
- 2021-03-03
- Peptides
- Urocanate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.56 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Venskutonyte, R. et al., Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production. Nat Commun (2021)
- Release Date
- 2021-03-03
- Peptides
- Urocanate reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A