SMTL ID : 6t8v.2 (1 other biounit)

Complement factor B in complex with (S)-5,7-Dimethyl-4-((2-phenylpiperidin-1-yl)methyl)-1H-indole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Y.216, A.217 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.217 SO4.2: 3 residues within 4Å: Chain A: D.178, G.181, R.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.182 Water bridges: A:G.181, A:G.181 Salt bridges: A:R.185 SO4.3: 3 residues within 4Å: Chain A: K.170, E.171, P.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.171 Water bridges: A:E.171

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 1 residues within 4Å: Chain A: H.62 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.62, H2O.1 ZN.5: 2 residues within 4Å: Chain A: D.186, H.264 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.186, A:D.186, A:H.264

1 x MVK: 4-[(2~{S})-1-[(5,7-dimethyl-1~{H}-indol-4-yl)methyl]piperidin-2-yl]benzoic acid(Non-covalent)

MVK.6: 16 residues within 4Å: Chain A: E.98, Y.100, A.190, P.191, Y.193, T.221, C.222, R.223, S.226, I.244, S.245, W.246, G.247, V.248, V.249, D.250 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.190, A:P.191, A:Y.193, A:I.244, A:W.246 Hydrogen bonds: A:T.221, A:T.221, A:D.250, A:D.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mainolfi, N. et al., Discovery of 4-((2S,4S)-4-Ethoxy-1-((5-methoxy-7-methyl-1H-indol-4-yl)methyl)piperidin-2-yl)benzoic Acid (LNP023), a Factor B Inhibitor Specifically Designed To Be Applicable to Treating a Diverse Array of Complement Mediated Diseases. J.Med.Chem. (2020)

Release Date

2020-03-04

Peptides

Complement factor B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Complement factor B

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