- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.12 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.2: 39 residues within 4Å:- Chain A: P.103, F.104, I.128, G.129, C.154, V.155, V.158, V.205, G.206, V.207, G.208, R.209, I.210, G.211, Y.229, D.230, Y.231, Q.232, N.263, C.264, P.265, L.266, H.267, S.269, T.270, L.273, T.291, A.292, R.293, D.317, V.318, H.346, S.348, G.349, R.391, A.392, Y.393, G.394
- Ligands: FMT.4
21 PLIP interactions:21 interactions with chain A- Hydrophobic interactions: A:I.128, A:V.158, A:I.210
- Hydrogen bonds: A:R.209, A:I.210, A:D.230, A:Q.232, A:H.267, A:T.291, A:H.346, A:G.349, A:Y.393
- Water bridges: A:G.129, A:D.131, A:G.208, A:R.209, A:R.209, A:G.211, A:L.266, A:T.390
- Salt bridges: A:R.209
NAI.7: 37 residues within 4Å:- Chain B: P.103, F.104, I.128, G.129, C.154, V.155, V.158, V.205, G.206, V.207, G.208, R.209, I.210, G.211, Y.229, D.230, Y.231, Q.232, N.263, C.264, P.265, L.266, H.267, T.270, L.273, T.291, A.292, R.293, D.317, V.318, H.346, S.348, G.349, R.391, A.392, Y.393, G.394
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:I.128, B:V.158, B:I.210
- Hydrogen bonds: B:R.209, B:I.210, B:D.230, B:Q.232, B:H.267, B:T.291, B:H.346, B:G.349, B:Y.393
- Water bridges: B:G.129, B:D.131, B:G.208, B:R.209, B:R.209, B:G.211, B:L.266, B:R.293, B:T.390
- Salt bridges: B:R.209
- 4 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 4 residues within 4Å:- Chain A: L.266, H.267, E.268, R.271
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.271, A:R.271
- Water bridges: A:D.136, A:D.136, A:E.268
FMT.4: 6 residues within 4Å:- Chain A: Y.231, H.267, S.269, G.394, Q.395
- Ligands: NAI.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.395, A:Q.395
FMT.8: 6 residues within 4Å:- Chain B: V.150, T.151, G.152, S.153, R.357, R.377
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.151, B:R.377
FMT.9: 2 residues within 4Å:- Chain B: E.252, A.255
No protein-ligand interaction detected (PLIP)- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yilmazer, B. et al., Structural insights into the NAD + -dependent formate dehydrogenase mechanism revealed from the NADH complex and the formate NAD + ternary complex of the Chaetomium thermophilum enzyme. J.Struct.Biol. (2020)
- Release Date
- 2020-11-18
- Peptides
- Formate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CCCB
DDD
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.12 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 4 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yilmazer, B. et al., Structural insights into the NAD + -dependent formate dehydrogenase mechanism revealed from the NADH complex and the formate NAD + ternary complex of the Chaetomium thermophilum enzyme. J.Struct.Biol. (2020)
- Release Date
- 2020-11-18
- Peptides
- Formate dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CCCB
DDD