SMTL ID : 6tbe.1

LC3A in complex with (3R,4S,5R,6R)-5-hydroxy-6-((4-hydroxy-3-(4-hydroxy-3-isopentylbenzamido)-8-methyl-2-oxo-2H-chromen-7-yl)oxy)-3-methoxy-2,2-dimethyltetrahydro-2H-pyran-4-yl carbamate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

monomer

Ligands

1 x NOV: NOVOBIOCIN(Non-covalent)

NOV.1: 16 residues within 4Å: Chain A: E.19, Q.22, I.23, Q.26, H.27, K.30, I.35, K.49, K.51, F.52, L.53, P.55, V.58, L.63, I.66, R.70 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.35, A:K.51, A:F.52, A:F.52, A:L.53, A:L.53, A:P.55, A:L.63, A:I.66 Hydrogen bonds: A:Q.22, A:K.49, A:L.53, A:L.53 Water bridges: A:Q.26, A:H.27, A:K.30, A:K.30 Salt bridges: A:K.30

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: Q.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.72 EDO.3: 5 residues within 4Å: Chain A: K.8, Q.9, R.10, R.11, S.12 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartmann, M. et al., Demonstrating Ligandability of the LC3A and LC3B Adapter Interface. J.Med.Chem. (2021)

Release Date

2020-11-18

Peptides

Microtubule-associated proteins 1A/1B light chain 3A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Microtubule-associated proteins 1A/1B light chain 3A