SMTL ID : 6tbo.1

3C-like protease from Southampton virus complexed with FMOPL000363a.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

hetero-1-1-mer

Ligands

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 6 residues within 4Å: Chain A: R.89, E.93, M.130, D.131 Chain B: T.3, W.5 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.3 DMS.2: 4 residues within 4Å: Chain A: P.66, D.67, L.68, T.69 No protein-ligand interaction detected (PLIP) DMS.5: 3 residues within 4Å: Chain B: W.15, R.88, D.89 No protein-ligand interaction detected (PLIP)

1 x N0E: ~{N}-(4-hydroxyphenyl)-3-phenyl-propanamide(Non-covalent)

N0E.3: 7 residues within 4Å: Chain A: R.100, L.122, G.124 Chain B: V.81, L.121, T.122, G.123 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:V.81, B:L.121, A:L.122 Hydrogen bonds: B:L.121, A:R.100

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain B: C.76, E.78, G.101, A.102, I.103, Q.116 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:C.76, B:I.103, B:Q.116, B:Q.116 Water bridges: B:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, J. et al., In crystallo-screening for discovery of human norovirus 3C-like protease inhibitors. J Struct Biol X (2020)

Release Date

2020-08-19

Peptides

Genome polyprotein: A
Genome polyprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Genome polyprotein

Genome polyprotein

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