SMTL ID : 6tbu.1

Structure of Drosophila melanogaster Dispatched

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: N.767, S.769, S.770, R.771, E.836, P.837, H.838, L.898 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.838

9 x Y01: CHOLESTEROL HEMISUCCINATE(Covalent)(Non-covalent)

Y01.2: 13 residues within 4Å: Chain A: I.35, L.39, L.44, P.45, D.46, F.47, L.445, C.480, L.483, G.484, F.499, L.504 Ligands: Y01.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.44, A:P.45, A:L.445, A:L.445, A:L.483 Y01.3: 9 residues within 4Å: Chain A: L.445, V.448, V.451, S.452, C.480, L.483, V.507, I.511 Ligands: Y01.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.445, A:L.445, A:V.448 Y01.4: 9 residues within 4Å: Chain A: W.11, V.15, R.19, L.22, V.23, S.26, I.27, Y.30, T.616 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.11, A:V.15, A:L.22, A:I.27 Salt bridges: A:R.19 Y01.5: 11 residues within 4Å: Chain A: C.661, I.662, K.664, S.665, Y.669, W.673, I.676, F.677, F.1100, F.1104 Ligands: Y01.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.673, A:F.1100 Y01.6: 11 residues within 4Å: Chain A: A.1066, T.1067, G.1070, L.1071, G.1074, I.1075, M.1077, A.1078, V.1092, I.1096 Ligands: Y01.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:M.1077, A:A.1078, A:I.1096 Y01.7: 18 residues within 4Å: Chain A: F.677, L.680, V.706, N.1001, V.1005, L.1009, M.1077, I.1085, V.1089, V.1092, V.1093, I.1096, V.1097, F.1100, Y.1101 Ligands: Y01.5, Y01.6, Y01.8 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.677, A:V.1005, A:L.1009, A:L.1009, A:I.1096 Y01.8: 9 residues within 4Å: Chain A: L.680, S.683, S.684, I.687, N.1001, V.1005, L.1008, L.1009 Ligands: Y01.7 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.687, A:V.1005, A:L.1008, A:L.1009 Hydrogen bonds: A:L.1009 Y01.9: 10 residues within 4Å: Chain A: A.679, A.682, S.683, V.686, I.687, Y.691, P.692, I.1007, L.1008, G.1010 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.691 Y01.10: 8 residues within 4Å: Chain A: L.579, A.582, G.583, Y.586, A.587, Y.589, S.590, L.969 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.582, A:Y.586, A:Y.589

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 5 residues within 4Å: Chain A: M.316, L.317, A.318, N.319, L.369 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cannac, F. et al., Cryo-EM structure of the Hedgehog release protein Dispatched. Sci Adv (2020)

Release Date

2020-06-03

Peptides

Protein dispatched: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Protein dispatched

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