SMTL ID : 6tcd.1 (1 other biounit)

Crystal structure of Salmo salar RidA-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

homo-trimer

Ligands

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: I.19, R.20, Y.24, L.42, R.120 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.19, A:Y.24 Water bridges: A:R.20, A:R.20 Salt bridges: A:R.20, A:R.120 ACT.2: 7 residues within 4Å: Chain A: F.92, R.110, A.111, A.112 Chain B: Y.24, G.38, E.125 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.110 Salt bridges: A:R.110 Hydrophobic interactions: B:Y.24 ACT.3: 5 residues within 4Å: Chain B: F.92, R.110, A.111, A.112 Chain C: Y.24 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:R.110 Water bridges: B:A.112, B:A.112, C:Y.24 Salt bridges: B:R.110 Hydrophobic interactions: C:Y.24 ACT.4: 7 residues within 4Å: Chain A: Y.24, G.38, E.125 Chain C: F.92, R.110, A.111, A.112 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:Y.24 Water bridges: A:Y.24 Hydrogen bonds: C:R.110 Salt bridges: C:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Digiovanni, S. et al., Two novel fish paralogs provide insights into the Rid family of imine deaminases active in pre-empting enamine/imine metabolic damage. Sci Rep (2020)

Release Date

2020-07-29

Peptides

Ribonuclease UK114: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ribonuclease UK114

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