SMTL ID : 6td2.1

Mus musculus Acetylcholinesterase in complex with N-(2-(diethylamino)ethyl)-1-(4-(trifluoromethyl)phenyl)methanesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.345, N.350, L.353 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.345, A:N.350 NAG.2: 1 residues within 4Å: Chain A: N.464 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.462, A:N.464

2 x N2K: ~{N}-[2-(diethylamino)ethyl]-1-[4-(trifluoromethyl)phenyl]methanesulfonamide(Non-covalent)

N2K.3: 16 residues within 4Å: Chain A: Y.72, D.74, W.86, G.120, G.121, G.122, Y.124, Y.133, E.202, W.286, F.297, Y.337, F.338, Y.341, H.447 Ligands: PG0.9 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.86, A:W.86, A:Y.337, A:Y.337 Hydrogen bonds: A:Y.124 Water bridges: A:S.125, A:S.125 Salt bridges: A:E.202 pi-Stacking: A:Y.341 N2K.11: 13 residues within 4Å: Chain B: Y.72, D.74, W.86, G.121, Y.124, Y.133, E.202, W.286, F.297, Y.337, F.338, Y.341, H.447 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.86, B:W.86, B:Y.337, B:Y.337 Salt bridges: B:E.202 pi-Stacking: B:Y.341 pi-Cation interactions: B:W.86, B:W.86

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: G.234, T.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.238 EDO.5: 5 residues within 4Å: Chain A: K.23, A.24, P.25, R.136, D.460 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.136 EDO.6: 2 residues within 4Å: Chain A: D.333, W.442 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.441 EDO.12: 1 residues within 4Å: Chain B: E.468 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.468 EDO.13: 6 residues within 4Å: Chain B: T.112, P.113, E.142, G.143, A.144, R.485 No protein-ligand interaction detected (PLIP) EDO.14: 2 residues within 4Å: Chain B: Y.72, Y.341 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.72, B:Y.341

5 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.7: 3 residues within 4Å: Chain A: V.303, D.304, G.305 No protein-ligand interaction detected (PLIP) PG0.8: 7 residues within 4Å: Chain A: H.381, Y.382, D.384, H.393, T.528 Chain B: Q.527 Ligands: PE4.10 No protein-ligand interaction detected (PLIP) PG0.9: 3 residues within 4Å: Chain A: Y.72, H.287 Ligands: N2K.3 No protein-ligand interaction detected (PLIP) PG0.15: 4 residues within 4Å: Chain B: K.332, D.333, D.396, L.441 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.332 Water bridges: B:R.395 PG0.16: 3 residues within 4Å: Chain B: D.304, G.305, S.309 No protein-ligand interaction detected (PLIP)

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.10: 15 residues within 4Å: Chain A: A.377, L.380, H.381, Q.527, F.531, F.535 Chain B: A.377, L.380, H.381, Q.527, T.528, F.531, F.535 Ligands: PG0.8, ETE.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.381, A:Q.527

1 x ETE: 2-{2-[2-2-(METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-covalent)

ETE.17: 4 residues within 4Å: Chain B: H.381, Y.382, D.384 Ligands: PE4.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Andersson, C.D. et al., Physical Mechanisms Governing Substituent Effects on Arene-Arene Interactions in a Protein Milieu. J.Phys.Chem.B (2020)

Release Date

2020-10-14

Peptides

Acetylcholinesterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acetylcholinesterase

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