SMTL ID : 6tdv.1

Cryo-EM structure of Euglena gracilis mitochondrial ATP synthase, membrane region

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

25 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 34 residues within 4Å: Chain A: Q.86, L.89, P.90, A.92, S.93, V.96, F.97, Y.100, G.101, L.103, P.104, V.107, W.108, Y.114, Y.136, L.140, L.332, P.333, W.334, R.335, F.336, V.337, W.341, R.345 Chain C: A.119, W.122 Chain N: F.46, P.57, Q.58, L.61 Ligands: CDL.2, CDL.3, CDL.4, CDL.6 Ligand excluded by PLIP CDL.2: 40 residues within 4Å: Chain A: Y.47, Q.52, K.53, T.54, F.336, V.337, S.338, A.340, W.341 Chain C: Y.41, A.44, V.45, F.48, K.52, K.64, H.117, W.122, F.126, A.129, W.130, F.133 Chain E: F.101, G.105, Y.106, F.108, F.109, V.110, I.112 Chain J: G.65, G.66, K.67, F.69, V.70 Chain N: F.60, F.64, F.65 Ligands: CDL.1, CDL.3, CDL.5, CDL.22 Ligand excluded by PLIP CDL.3: 32 residues within 4Å: Chain A: K.53, E.316, G.319, R.320, E.321, F.336, V.337, S.338, N.339 Chain E: K.47, N.48, Y.97, I.98, F.101, I.102, V.103, G.105, Y.106, I.112, I.162, F.165, M.166 Chain I: P.18, W.21, A.25, L.29 Chain J: F.69 Ligands: CDL.1, CDL.2, CDL.4, CDL.5, CDL.22 Ligand excluded by PLIP CDL.4: 18 residues within 4Å: Chain A: R.320, K.324, W.334, R.335, F.336, V.337 Chain I: Y.10, T.11, R.12, F.14, V.15, W.21, L.24, A.25, T.28, L.29 Ligands: CDL.1, CDL.3 Ligand excluded by PLIP CDL.5: 45 residues within 4Å: Chain C: L.38, F.39, Y.41, V.42, V.45, I.46, F.48, T.49, K.52, K.64, P.96, K.97, G.98, P.99, I.100, A.101, Y.104 Chain D: W.89, L.90, W.92, S.93, F.96, F.97 Chain E: F.147 Chain J: P.53, V.54, W.56, Y.57, M.59, M.60, M.63, K.67, F.69, V.70, A.73, L.74, L.76, A.77, L.78, F.79 Ligands: CDL.2, CDL.3, CDL.8, LPP.9, CDL.22 Ligand excluded by PLIP CDL.6: 33 residues within 4Å: Chain A: I.18, L.19, V.22, L.25, Q.26, H.29, Y.78, K.82, M.85, Q.86, L.88, L.89, L.91, A.92, F.95, V.96, R.345 Chain C: T.55, F.113, P.114, L.115, K.116, A.119, L.120, A.123, C.124, F.126, V.127, W.130, L.131 Chain N: W.55, P.57 Ligands: CDL.1 Ligand excluded by PLIP CDL.8: 19 residues within 4Å: Chain C: W.27, N.31, K.34, K.35, F.39 Chain D: D.71, R.72, R.73, W.76, I.82, H.84, S.86, G.87, W.89 Chain J: W.82 Chain P: S.2, F.6, F.7 Ligands: CDL.5 Ligand excluded by PLIP CDL.16: 36 residues within 4Å: Chain 4: W.60, Y.63, L.64, W.67, F.71, T.74, V.75, W.78, E.79, K.82, W.109 Chain 5: L.48, F.50, A.51, V.52, F.54, W.55, A.56, V.59, H.62, F.63 Chain 7: F.47 Chain L: W.7, S.11, I.13, P.14, R.15, P.18, K.19, M.21, A.22, L.25 Chain X: I.206, F.207 Ligands: CDL.46, TRT.48 Ligand excluded by PLIP CDL.17: 15 residues within 4Å: Chain 4: Y.52, R.56 Chain L: R.70, Y.100, W.104, F.108, L.111 Chain M: F.41, R.49, F.50, C.53, F.54, F.57 Ligands: CDL.45, CDL.55 Ligand excluded by PLIP CDL.22: 21 residues within 4Å: Chain C: F.126 Chain D: F.96, F.97 Chain I: T.28, V.31, G.32, W.35 Chain N: W.36, W.39, K.43, F.60, L.61, L.62, F.65, Q.66, R.68, N.69 Ligands: CDL.2, CDL.3, CDL.5, LMT.7 Ligand excluded by PLIP CDL.25: 22 residues within 4Å: Chain 4: W.12, I.13, G.16, I.17, K.19, A.20, N.23 Chain E: I.197, I.200, T.201, F.207, Y.211, I.212, L.217, I.220, L.221, I.224 Chain O: R.49, A.50, T.55, I.56, V.57 Ligand excluded by PLIP CDL.29: 29 residues within 4Å: Chain E: F.156, T.157, Y.159, R.160, N.163 Chain J: V.17, W.18, L.21, R.22, L.24, Q.25 Chain Q: E.14, L.29, L.31, M.34, L.42, T.43, F.45, A.46, R.47, G.48, V.49, R.50, W.51, Q.52, F.53, V.55 Ligands: LPP.30, TRT.31 Ligand excluded by PLIP CDL.32: 33 residues within 4Å: Chain 6: P.57, Q.58, L.61 Chain T: Q.86, L.89, P.90, A.92, S.93, V.96, F.97, Y.100, G.101, L.103, P.104, V.107, W.108, Y.114, Y.136, L.140, L.332, P.333, W.334, R.335, F.336, V.337, W.341, R.345 Chain V: A.119, W.122 Ligands: CDL.33, CDL.34, CDL.35, CDL.37 Ligand excluded by PLIP CDL.33: 40 residues within 4Å: Chain 2: G.65, G.66, K.67, F.69, V.70 Chain 6: F.60, F.64, F.65 Chain T: Y.47, Q.52, K.53, T.54, F.336, V.337, S.338, A.340, W.341 Chain V: Y.41, A.44, V.45, F.48, K.52, K.64, H.117, W.122, F.126, A.129, W.130, F.133 Chain X: F.101, G.105, Y.106, F.108, F.109, V.110, I.112 Ligands: CDL.32, CDL.34, CDL.36, CDL.52 Ligand excluded by PLIP CDL.34: 32 residues within 4Å: Chain 1: P.18, W.21, A.25, L.29 Chain 2: F.69 Chain T: K.53, E.316, G.319, R.320, E.321, F.336, V.337, S.338, N.339 Chain X: K.47, N.48, Y.97, I.98, F.101, I.102, V.103, G.105, Y.106, I.112, I.162, F.165, M.166 Ligands: CDL.32, CDL.33, CDL.35, CDL.36, CDL.52 Ligand excluded by PLIP CDL.35: 18 residues within 4Å: Chain 1: Y.10, T.11, R.12, F.14, V.15, W.21, L.24, A.25, T.28, L.29 Chain T: R.320, K.324, W.334, R.335, F.336, V.337 Ligands: CDL.32, CDL.34 Ligand excluded by PLIP CDL.36: 45 residues within 4Å: Chain 2: P.53, V.54, W.56, Y.57, M.59, M.60, M.63, K.67, F.69, V.70, A.73, L.74, L.76, A.77, L.78, F.79 Chain V: L.38, F.39, Y.41, V.42, V.45, I.46, F.48, T.49, K.52, K.64, P.96, K.97, G.98, P.99, I.100, A.101, Y.104 Chain W: W.89, L.90, W.92, S.93, F.96, F.97 Chain X: F.147 Ligands: CDL.33, CDL.34, CDL.39, LPP.40, CDL.52 Ligand excluded by PLIP CDL.37: 33 residues within 4Å: Chain 6: W.55, P.57 Chain T: I.18, L.19, V.22, L.25, Q.26, H.29, Y.78, K.82, M.85, Q.86, L.88, L.89, L.91, A.92, F.95, V.96, R.345 Chain V: T.55, F.113, P.114, L.115, K.116, A.119, L.120, A.123, C.124, F.126, V.127, W.130, L.131 Ligands: CDL.32 Ligand excluded by PLIP CDL.39: 19 residues within 4Å: Chain 2: W.82 Chain 8: S.2, F.6, F.7 Chain V: W.27, N.31, K.34, K.35, F.39 Chain W: D.71, R.72, R.73, W.76, I.82, H.84, S.86, G.87, W.89 Ligands: CDL.36 Ligand excluded by PLIP CDL.45: 36 residues within 4Å: Chain 4: W.7, S.11, I.13, P.14, R.15, P.18, K.19, M.21, A.22, L.25 Chain E: I.206, F.207 Chain L: W.60, Y.63, L.64, W.67, F.71, T.74, V.75, W.78, E.79, K.82, W.109 Chain M: L.48, F.50, A.51, V.52, F.54, W.55, A.56, V.59, H.62, F.63 Chain O: F.47 Ligands: TRT.15, CDL.17 Ligand excluded by PLIP CDL.46: 17 residues within 4Å: Chain 4: W.67, R.70, Y.100, W.104, L.107, F.108, L.111 Chain 5: F.41, R.49, F.50, C.53, F.54, F.57 Chain L: Y.52, R.56 Ligands: CDL.16, CDL.55 Ligand excluded by PLIP CDL.52: 21 residues within 4Å: Chain 1: T.28, V.31, G.32, W.35 Chain 6: W.36, W.39, K.43, F.60, L.61, L.62, F.65, Q.66, R.68, N.69 Chain V: F.126 Chain W: F.96, F.97 Ligands: CDL.33, CDL.34, CDL.36, LMT.38 Ligand excluded by PLIP CDL.55: 41 residues within 4Å: Chain 0: H.73, V.77, Q.80 Chain 4: F.108, L.111, I.114, Y.115, L.120, Y.121 Chain 5: F.57 Chain 7: W.79, L.80, L.82, P.83, F.86, Q.87, W.90, R.94 Chain F: L.16 Chain H: H.73, Q.80, Q.84 Chain L: L.111, I.114, Y.115, L.120, Y.121 Chain M: F.57 Chain O: W.79, L.80, L.82, P.83, F.86, Q.87, W.90, R.94 Chain Y: L.16 Ligands: LPP.13, CDL.17, LPP.44, CDL.46 Ligand excluded by PLIP CDL.56: 22 residues within 4Å: Chain 7: R.49, A.50, T.55, I.56, V.57 Chain L: W.12, I.13, G.16, I.17, K.19, A.20, N.23 Chain X: I.197, I.200, T.201, F.207, Y.211, I.212, L.217, I.220, L.221, I.224 Ligand excluded by PLIP CDL.59: 29 residues within 4Å: Chain 2: V.17, W.18, L.21, R.22, L.24, Q.25 Chain 9: E.14, L.29, L.31, M.34, L.42, T.43, F.45, A.46, R.47, G.48, V.49, R.50, W.51, Q.52, F.53, V.55 Chain X: F.156, T.157, Y.159, R.160, N.163 Ligands: LPP.60, TRT.61 Ligand excluded by PLIP

8 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.7: 19 residues within 4Å: Chain C: E.13, Q.16 Chain D: K.60 Chain E: N.5, Y.7 Chain I: V.31, W.34, W.35, K.39 Chain K: F.16, L.19 Chain N: F.32, G.33, W.36, N.69, K.73 Ligands: CDL.22, LPP.23, LPP.24 7 PLIP interactions: 1 interactions with chain N, 1 interactions with chain E, 3 interactions with chain C, 2 interactions with chain I Hydrogen bonds: N:K.73, E:N.5, C:E.13, C:E.13, C:Q.16 Hydrophobic interactions: I:W.35, I:W.35 LMT.10: 23 residues within 4Å: Chain E: H.70, I.71, K.74, Y.83, H.186, S.187, L.190, G.191, I.224, V.225, F.227, Y.228, L.229, I.231 Chain F: L.21, N.25, M.28, S.29, L.30 Chain H: A.41 Chain N: S.14, P.15, H.18 11 PLIP interactions: 8 interactions with chain E, 1 interactions with chain F, 2 interactions with chain N Hydrophobic interactions: E:H.186, E:V.225, E:F.227, E:Y.228, E:Y.228 Hydrogen bonds: E:K.74, E:S.187, F:N.25, N:S.14 Salt bridges: E:K.74, N:H.18 LMT.21: 15 residues within 4Å: Chain M: P.2, L.3, V.7, V.8, Q.9, G.10, K.18 Chain X: S.31, K.33, F.227, G.230, I.231, Y.234 Ligands: TRT.42, TRT.43 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain X Hydrophobic interactions: M:P.2, X:Y.234, X:Y.234 Hydrogen bonds: M:V.8 LMT.28: 12 residues within 4Å: Chain P: F.16, R.17, H.20, R.21, P.57, S.59, W.60 Chain Q: K.64, N.65, R.66, D.67, D.68 6 PLIP interactions: 1 interactions with chain Q, 5 interactions with chain P Hydrogen bonds: Q:D.67, P:R.21, P:W.60 Salt bridges: P:R.17, P:H.20, P:H.20 LMT.38: 19 residues within 4Å: Chain 1: V.31, W.34, W.35, K.39 Chain 3: F.16, L.19 Chain 6: F.32, G.33, W.36, N.69, K.73 Chain V: E.13, Q.16 Chain W: K.60 Chain X: N.5, Y.7 Ligands: CDL.52, LPP.53, LPP.54 7 PLIP interactions: 1 interactions with chain X, 2 interactions with chain 1, 3 interactions with chain V, 1 interactions with chain 6 Hydrogen bonds: X:N.5, V:E.13, V:E.13, V:Q.16, 6:K.73 Hydrophobic interactions: 1:W.35, 1:W.35 LMT.41: 23 residues within 4Å: Chain 0: A.41 Chain 6: S.14, P.15, H.18 Chain X: H.70, I.71, K.74, Y.83, H.186, S.187, L.190, G.191, I.224, V.225, F.227, Y.228, L.229, I.231 Chain Y: L.21, N.25, M.28, S.29, L.30 11 PLIP interactions: 2 interactions with chain 6, 8 interactions with chain X, 1 interactions with chain Y Hydrogen bonds: 6:S.14, X:K.74, X:S.187, Y:N.25 Salt bridges: 6:H.18, X:K.74 Hydrophobic interactions: X:H.186, X:V.225, X:F.227, X:Y.228, X:Y.228 LMT.49: 15 residues within 4Å: Chain 5: P.2, L.3, V.7, V.8, Q.9, G.10, K.18 Chain E: S.31, K.33, F.227, G.230, I.231, Y.234 Ligands: TRT.11, TRT.12 4 PLIP interactions: 2 interactions with chain 5, 2 interactions with chain E Hydrophobic interactions: 5:P.2, E:Y.234, E:Y.234 Hydrogen bonds: 5:V.8 LMT.58: 12 residues within 4Å: Chain 8: F.16, R.17, H.20, R.21, P.57, S.59, W.60 Chain 9: K.64, N.65, R.66, D.67, D.68 6 PLIP interactions: 5 interactions with chain 8, 1 interactions with chain 9 Hydrogen bonds: 8:R.21, 8:W.60, 9:D.67 Salt bridges: 8:R.17, 8:H.20, 8:H.20

12 x LPP: 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE(Non-covalent)

LPP.9: 12 residues within 4Å: Chain E: D.143, T.144, M.145, F.147, F.148 Chain J: N.52, P.53, V.54, K.55 Chain P: L.3, L.8 Ligands: CDL.5 8 PLIP interactions: 6 interactions with chain E, 1 interactions with chain P, 1 interactions with chain J Hydrophobic interactions: E:F.147, E:F.148, E:F.148, P:L.3 Hydrogen bonds: E:D.143, E:M.145, E:F.148, J:N.52 LPP.13: 22 residues within 4Å: Chain F: I.15, L.16 Chain H: Y.30, V.31, P.34, F.38, W.43, S.44, N.47, R.48, R.51 Chain O: V.73, V.77, L.80, P.83, Q.87 Chain R: F.44, P.45, L.48, L.52 Ligands: LPP.26, CDL.55 11 PLIP interactions: 1 interactions with chain O, 1 interactions with chain F, 7 interactions with chain H, 2 interactions with chain R Hydrophobic interactions: O:P.83, F:L.16, H:P.34, H:F.38, H:W.43, H:W.43, R:P.45, R:L.48 Hydrogen bonds: H:N.47 Salt bridges: H:R.48, H:R.51 LPP.20: 14 residues within 4Å: Chain 0: Y.30 Chain 7: R.72, V.73, K.75, Y.76 Chain M: I.32, D.33, L.35, W.36, V.39 Ligands: TRT.14, TRT.18, LPP.44 Chain a: W.41 7 PLIP interactions: 4 interactions with chain 7, 2 interactions with chain 0, 1 interactions with chain M Hydrophobic interactions: 7:V.73, 0:Y.30, 0:Y.30, M:I.32 Salt bridges: 7:R.72, 7:R.72, 7:K.75 LPP.23: 10 residues within 4Å: Chain E: Y.11, I.15 Chain K: F.16, L.20 Chain N: S.25, S.26, L.28 Chain R: T.68, V.70 Ligands: LMT.7 7 PLIP interactions: 2 interactions with chain N, 2 interactions with chain K, 2 interactions with chain R, 1 interactions with chain E Hydrogen bonds: N:S.25, N:S.26, R:T.68 Hydrophobic interactions: K:F.16, K:F.16, R:V.70, E:Y.11 LPP.24: 10 residues within 4Å: Chain I: W.35 Chain N: V.30, F.32, R.35, W.36, R.38, W.39, F.42 Chain R: F.71 Ligands: LMT.7 9 PLIP interactions: 1 interactions with chain R, 8 interactions with chain N Hydrophobic interactions: R:F.71, N:F.32, N:F.32, N:R.35, N:W.36, N:W.39 Salt bridges: N:R.35, N:R.35, N:R.38 LPP.26: 14 residues within 4Å: Chain 5: I.32, D.33, L.35, W.36, V.39 Chain H: Y.30 Chain O: R.72, V.73, K.75, Y.76 Chain R: W.41 Ligands: LPP.13, TRT.47, TRT.50 7 PLIP interactions: 4 interactions with chain O, 1 interactions with chain 5, 2 interactions with chain H Hydrophobic interactions: O:V.73, 5:I.32, H:Y.30, H:Y.30 Salt bridges: O:R.72, O:R.72, O:K.75 LPP.30: 8 residues within 4Å: Chain J: S.12, L.14, W.18 Chain Q: R.50, W.51, I.54, I.58 Ligands: CDL.29 10 PLIP interactions: 6 interactions with chain Q, 4 interactions with chain J Hydrophobic interactions: Q:I.54, Q:I.54, Q:I.58, J:W.18 Hydrogen bonds: Q:W.51, J:S.12, J:S.12, J:W.18 Salt bridges: Q:R.50, Q:R.50 LPP.40: 12 residues within 4Å: Chain 2: N.52, P.53, V.54, K.55 Chain 8: L.3, L.8 Chain X: D.143, T.144, M.145, F.147, F.148 Ligands: CDL.36 8 PLIP interactions: 1 interactions with chain 8, 6 interactions with chain X, 1 interactions with chain 2 Hydrophobic interactions: 8:L.3, X:F.147, X:F.148, X:F.148 Hydrogen bonds: X:D.143, X:M.145, X:F.148, 2:N.52 LPP.44: 22 residues within 4Å: Chain 0: Y.30, V.31, P.34, F.38, W.43, S.44, N.47, R.48, R.51 Chain 7: V.73, V.77, L.80, P.83, Q.87 Chain Y: I.15, L.16 Ligands: LPP.20, CDL.55 Chain a: F.44, P.45, L.48, L.52 11 PLIP interactions: 1 interactions with chain Y, 2 interactions with chain a, 7 interactions with chain 0, 1 interactions with chain 7 Hydrophobic interactions: Y:L.16, a:P.45, a:L.48, 0:P.34, 0:F.38, 0:W.43, 0:W.43, 7:P.83 Hydrogen bonds: 0:N.47 Salt bridges: 0:R.48, 0:R.51 LPP.53: 10 residues within 4Å: Chain 3: F.16, L.20 Chain 6: S.25, S.26, L.28 Chain X: Y.11, I.15 Ligands: LMT.38 Chain a: T.68, V.70 7 PLIP interactions: 2 interactions with chain a, 2 interactions with chain 6, 2 interactions with chain 3, 1 interactions with chain X Hydrophobic interactions: a:V.70, 3:F.16, 3:F.16, X:Y.11 Hydrogen bonds: a:T.68, 6:S.25, 6:S.26 LPP.54: 10 residues within 4Å: Chain 1: W.35 Chain 6: V.30, F.32, R.35, W.36, R.38, W.39, F.42 Ligands: LMT.38 Chain a: F.71 9 PLIP interactions: 1 interactions with chain a, 8 interactions with chain 6 Hydrophobic interactions: a:F.71, 6:F.32, 6:F.32, 6:R.35, 6:W.36, 6:W.39 Salt bridges: 6:R.35, 6:R.35, 6:R.38 LPP.60: 8 residues within 4Å: Chain 2: S.12, L.14, W.18 Chain 9: R.50, W.51, I.54, I.58 Ligands: CDL.59 10 PLIP interactions: 6 interactions with chain 9, 4 interactions with chain 2 Hydrophobic interactions: 9:I.54, 9:I.54, 9:I.58, 2:W.18 Hydrogen bonds: 9:W.51, 2:S.12, 2:S.12, 2:W.18 Salt bridges: 9:R.50, 9:R.50

16 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.11: 19 residues within 4Å: Chain E: L.27, S.31, L.68, I.72, Y.222, L.223, I.226, F.227 Chain F: F.37, F.41, R.44 Chain H: K.23, L.24, F.25, V.28, F.29 Ligands: TRT.12, TRT.27, LMT.49 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain H pi-Stacking: F:F.41 Hydrophobic interactions: H:K.23, H:F.25, H:F.25 TRT.12: 12 residues within 4Å: Chain 5: P.2, L.3, V.8 Chain E: F.227 Chain F: R.44 Chain O: A.22, L.23, K.25, A.26, E.29 Ligands: TRT.11, LMT.49 1 PLIP interactions: 1 interactions with chain O Hydrophobic interactions: O:K.25 TRT.14: 8 residues within 4Å: Chain L: V.90, D.91, L.92, I.95, V.96, L.99 Ligands: TRT.19, LPP.20 1 PLIP interactions: 1 interactions with chain L Hydrophobic interactions: L:D.91 TRT.15: 14 residues within 4Å: Chain L: L.102, A.105, Y.106, W.109, I.110, E.113, I.114, R.117, Y.121 Chain M: V.52, A.56 Chain Y: M.13, S.14 Ligands: CDL.45 No protein-ligand interaction detected (PLIP) TRT.18: 11 residues within 4Å: Chain 0: A.11, Y.14, K.15 Chain L: L.92 Chain M: R.27, L.30, L.35, W.38, V.39 Ligands: TRT.19, LPP.20 No protein-ligand interaction detected (PLIP) TRT.19: 4 residues within 4Å: Chain L: L.92 Chain M: W.38 Ligands: TRT.14, TRT.18 No protein-ligand interaction detected (PLIP) TRT.27: 14 residues within 4Å: Chain E: F.219, L.223 Chain F: F.37, F.40, F.41 Chain O: E.29, V.30, F.33, Q.34, A.37, P.59, M.60, N.63 Ligands: TRT.11 2 PLIP interactions: 2 interactions with chain O Hydrophobic interactions: O:P.59, O:M.60 TRT.31: 10 residues within 4Å: Chain E: F.156 Chain J: V.87, I.90, S.91, T.94, K.95 Chain Q: V.55, I.58, N.62 Ligands: CDL.29 1 PLIP interactions: 1 interactions with chain Q Hydrogen bonds: Q:N.62 TRT.42: 19 residues within 4Å: Chain 0: K.23, L.24, F.25, V.28, F.29 Chain X: L.27, S.31, L.68, I.72, Y.222, L.223, I.226, F.227 Chain Y: F.37, F.41, R.44 Ligands: LMT.21, TRT.43, TRT.57 4 PLIP interactions: 3 interactions with chain 0, 1 interactions with chain Y Hydrophobic interactions: 0:K.23, 0:F.25, 0:F.25 pi-Stacking: Y:F.41 TRT.43: 12 residues within 4Å: Chain 7: A.22, L.23, K.25, A.26, E.29 Chain M: P.2, L.3, V.8 Chain X: F.227 Chain Y: R.44 Ligands: LMT.21, TRT.42 1 PLIP interactions: 1 interactions with chain 7 Hydrophobic interactions: 7:K.25 TRT.47: 8 residues within 4Å: Chain 4: V.90, D.91, L.92, I.95, V.96, L.99 Ligands: LPP.26, TRT.51 1 PLIP interactions: 1 interactions with chain 4 Hydrophobic interactions: 4:D.91 TRT.48: 14 residues within 4Å: Chain 4: L.102, A.105, Y.106, W.109, I.110, E.113, I.114, R.117, Y.121 Chain 5: V.52, A.56 Chain F: M.13, S.14 Ligands: CDL.16 No protein-ligand interaction detected (PLIP) TRT.50: 11 residues within 4Å: Chain 4: L.92 Chain 5: R.27, L.30, L.35, W.38, V.39 Chain H: A.11, Y.14, K.15 Ligands: LPP.26, TRT.51 No protein-ligand interaction detected (PLIP) TRT.51: 4 residues within 4Å: Chain 4: L.92 Chain 5: W.38 Ligands: TRT.47, TRT.50 No protein-ligand interaction detected (PLIP) TRT.57: 14 residues within 4Å: Chain 7: E.29, V.30, F.33, Q.34, A.37, P.59, M.60, N.63 Chain X: F.219, L.223 Chain Y: F.37, F.40, F.41 Ligands: TRT.42 2 PLIP interactions: 2 interactions with chain 7 Hydrophobic interactions: 7:P.59, 7:M.60 TRT.61: 10 residues within 4Å: Chain 2: V.87, I.90, S.91, T.94, K.95 Chain 9: V.55, I.58, N.62 Chain X: F.156 Ligands: CDL.59 1 PLIP interactions: 1 interactions with chain 9 Hydrogen bonds: 9:N.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Muhleip, A. et al., Structure of a mitochondrial ATP synthase with bound native cardiolipin. Elife (2019)

Release Date

2019-11-27

Peptides

ATPTB1: AT
ATPTB3: BU
ATPTB6: CV
ATPTB12: DW
subunit a: EX
subunit b: FY
subunit d: GZ
subunit f: H0
subunit i/j: I1
subunit k: J2
subunit 8: K3
ATPEG1: L4
ATPEG2: M5
ATPEG3: N6
ATPEG4: O7
ATPEG5: P8
ATPEG6: Q9
ATPEG7: Ra
ATPEG8: Sb

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T
a

B
B

U
b

C
D

V
d

D
E

W
e

E
F

X
f

F
G

Y
g

G
H

Z
h

H
I

0
i

I
J

1
j

J
K

2
k

K
L

3
l

L
M

4
m

M
N

5
n

N
O

6
o

O
P

7
p

P
Q

8
q

Q
R

9
r

R
S

a
s

S
T

b
t

ATPTB1

ATPTB3

ATPTB6

ATPTB12

subunit a

subunit b

subunit d

subunit f

subunit i/j

subunit k

subunit 8

ATPEG1

ATPEG2

ATPEG3

ATPEG4

ATPEG5

ATPEG6

ATPEG7

ATPEG8

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