SMTL ID : 6tev.1

The structure of CYP121 in complex with inhibitor L44

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x N5W: 1-[[4-[4-(trifluoromethyl)phenyl]phenyl]methyl]imidazole(Non-covalent)

N5W.1: 17 residues within 4Å: Chain A: M.62, T.65, A.66, R.72, L.73, N.74, A.75, L.76, V.78, V.82, V.83, N.85, M.86, T.229, P.285 Ligands: N5W.2, HEM.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.76, A:V.83, A:V.83, A:P.285 N5W.2: 19 residues within 4Å: Chain A: T.77, V.78, S.163, L.164, A.167, F.168, N.181, W.182, D.185, V.228, T.229, G.232, A.233, S.237, F.280, Q.385, R.386 Ligands: N5W.1, HEM.5 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.78, A:A.167, A:F.168, A:F.168, A:F.168, A:W.182, A:V.228 Water bridges: A:R.386

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: D.16, R.17, S.248, Q.251, R.252, I.276, L.278, F.314 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.251, A:R.252, A:R.252 Water bridges: A:S.248, A:L.278 EDO.4: 4 residues within 4Å: Chain A: R.210, S.216, V.218, D.220 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.220

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.5: 30 residues within 4Å: Chain A: M.62, M.86, I.102, H.146, F.230, A.233, G.234, S.237, T.238, F.241, L.274, S.279, F.280, L.284, P.285, R.286, L.309, L.336, A.337, F.338, G.339, H.343, F.344, C.345, P.346, G.347, L.350, G.351 Ligands: N5W.1, N5W.2 17 PLIP interactions: 16 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:F.230, A:F.230, A:A.233, A:T.238, A:F.241, A:F.280, A:F.280, A:L.309, A:F.338, A:P.346 Water bridges: A:M.86, A:M.86 Salt bridges: A:R.286, A:H.343 pi-Stacking: A:F.338 Metal complexes: A:C.345, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walter, I. et al., Structure-Activity Relationship and Mode-Of-Action Studies Highlight 1-(4-Biphenylylmethyl)-1H-imidazole-Derived Small Molecules as Potent CYP121 Inhibitors. Chemmedchem (2021)

Release Date

2021-05-26

Peptides

Mycocyclosin synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mycocyclosin synthase

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