- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 4 residues within 4Å:- Chain A: A.24, E.25, K.389, E.452
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.389
GOL.4: 4 residues within 4Å:- Chain A: Q.238, Y.241, S.418, E.419
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.419
GOL.12: 4 residues within 4Å:- Chain B: A.24, E.25, K.389, E.452
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.389
GOL.13: 4 residues within 4Å:- Chain B: Q.238, Y.241, S.418, E.419
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.419
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
AKG.5: 14 residues within 4Å:- Chain A: R.576, Y.633, L.641, H.644, D.646, N.653, C.668, H.696, G.698, R.706, I.708, V.710, F.712
- Ligands: FE2.6
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:L.641, A:I.708
- Hydrogen bonds: A:Y.633, A:Y.633, A:N.653
- Salt bridges: A:R.576, A:H.644, A:R.706
AKG.14: 14 residues within 4Å:- Chain B: R.576, Y.633, L.641, H.644, D.646, N.653, C.668, H.696, G.698, R.706, I.708, V.710, F.712
- Ligands: FE2.15
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.641, B:I.708
- Hydrogen bonds: B:Y.633, B:N.653
- Salt bridges: B:R.576, B:H.644, B:R.706
- 4 x FE2: FE (II) ION(Non-covalent)
FE2.6: 4 residues within 4Å:- Chain A: H.644, D.646, H.696
- Ligands: AKG.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.644, A:D.646, A:D.646, A:H.696
FE2.7: 5 residues within 4Å:- Chain A: H.572, D.574, D.588, H.590, F.629
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:H.572, A:D.574, A:D.574, A:D.588, A:D.588
FE2.15: 4 residues within 4Å:- Chain B: H.644, D.646, H.696
- Ligands: AKG.14
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.644, B:D.646, B:D.646, B:H.696
FE2.16: 5 residues within 4Å:- Chain B: H.572, D.574, D.588, H.590, F.629
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:H.572, B:D.574, B:D.574, B:D.588, B:D.588
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.8: 4 residues within 4Å:- Chain A: D.89, D.92, H.230
- Ligands: UGA.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.89, A:D.92, A:D.92, A:H.230
MN.17: 4 residues within 4Å:- Chain B: D.89, D.92, H.230
- Ligands: UGA.11
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.89, B:D.92, B:D.92, B:H.230
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattoteia, D. et al., Identification of Regulatory Molecular 'Hot Spots' for LH/PLOD Collagen Glycosyltransferase Activity. Int J Mol Sci (2023)
- Release Date
- 2021-05-19
- Peptides
- Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x UGA: URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)
- 4 x FE2: FE (II) ION(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mattoteia, D. et al., Identification of Regulatory Molecular 'Hot Spots' for LH/PLOD Collagen Glycosyltransferase Activity. Int J Mol Sci (2023)
- Release Date
- 2021-05-19
- Peptides
- Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A