SMTL ID : 6tfi.1 (1 other biounit)

PXR IN COMPLEX WITH THROMBIN INHIBITOR COMPOUND 17

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: M.211, L.215, K.274, A.277 No protein-ligand interaction detected (PLIP) GOL.2: 5 residues within 4Å: Chain A: S.232, Q.248, M.276, L.279, T.280 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.232, A:Q.248, A:T.280, A:T.280 Water bridges: A:S.232, A:R.283

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 7 residues within 4Å: Chain A: L.91, Q.167, F.170, W.181, Y.188, M.205, H.209 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.91, A:F.170, A:W.181, A:W.181, A:W.181, A:Y.188 Hydrogen bonds: A:Q.167

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 3 residues within 4Å: Chain A: L.217, E.219, Y.222 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.219 Water bridges: A:T.172, A:K.213, A:K.213, A:E.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hillisch, A. et al., Design, Synthesis, and Pharmacological Characterization of a Neutral, Non-Prodrug Thrombin Inhibitor with Good Oral Pharmacokinetics. J.Med.Chem. (2020)

Release Date

2020-11-11

Peptides

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor subfamily 1 group I member 2,Nuclear receptor coactivator 1

Related Entries With Identical Sequence