SMTL ID : 6tg2.1 (3 other biounits)

Structure of the PBP/SBP MotA in complex with mannopinic acid from A.tumefacien R10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x N72: (2~{R})-2-[[(3~{R},4~{R},5~{S})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexyl]amino]pentanedioic acid(Non-covalent)

N72.1: 15 residues within 4Å: Chain A: S.28, W.32, Q.58, Q.78, I.79, G.80, D.83, S.119, Y.121, W.156, W.226, R.229, D.252, T.288 Ligands: CA.7 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:W.32, A:Y.121 Hydrogen bonds: A:S.28, A:S.28, A:Q.58, A:Q.78, A:Q.78, A:G.80, A:S.119, A:Q.158, A:D.252 Water bridges: A:S.28, A:W.32, A:F.57, A:W.60, A:Q.78, A:R.229 Salt bridges: A:R.229

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: Q.231, N.235, N.284, S.285, A.287, K.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.235 EDO.3: 3 residues within 4Å: Chain A: D.55, T.56, E.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.55 EDO.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.5: 3 residues within 4Å: Chain A: G.31, A.209, R.229 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain A: V.322, D.323 No protein-ligand interaction detected (PLIP) CA.7: 7 residues within 4Å: Chain A: S.28, Q.58, S.207, G.208, W.226, R.229 Ligands: N72.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vigouroux, A. et al., Import pathways of the mannityl-opines into the bacterial pathogen Agrobacterium tumefaciens: structural, affinity and in vivo approaches. Biochem.J. (2020)

Release Date

2020-01-22

Peptides

MotA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MotA

Related Entries With Identical Sequence