SMTL ID : 6thb.2 (1 other biounit)

Receptor binding domain of the Cedar Virus attachment glycoprotein (G)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.78 Å

Oligo State

monomer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: C.105, N.106, G.173, E.174, F.176, Q.234 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.176 Hydrogen bonds: A:N.106, A:G.173, A:G.173 NAG.2: 5 residues within 4Å: Chain A: Q.96, I.115, N.117, S.129, E.131 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.131 Hydrogen bonds: A:N.117, A:E.131 Water bridges: A:E.131 NAG.3: 4 residues within 4Å: Chain A: D.123, N.124, N.220, R.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.185, A:N.220, A:R.223 NAG.4: 3 residues within 4Å: Chain A: N.294, W.295, N.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.294, A:N.294, A:W.295 NAG.5: 3 residues within 4Å: Chain A: V.10, N.357, T.360 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.10, A:T.360 Hydrogen bonds: A:T.360 NAG.6: 2 residues within 4Å: Chain A: K.144, N.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pryce, R. et al., A key region of molecular specificity orchestrates unique ephrin-B1 utilization by Cedar virus. Life Sci Alliance (2020)

Release Date

2019-12-18

Peptides

Attachment glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Attachment glycoprotein

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