SMTL ID : 6thh.1

Crystal structure of type I-D CRISPR-Cas nuclease Cas10d in complex with the SIRV3 AcrID1 (gp02) anti-CRISPR protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.48 Å

Oligo State

hetero-4-2-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain C: S.64, E.65, I.66, N.186 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.65, C:I.66 PO4.3: 4 residues within 4Å: Chain F: S.64, E.65, I.66, N.186 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.65, F:I.66

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain C: R.197, C.429, C.432, C.478, C.481 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.429, C:C.432, C:C.478, C:C.481 ZN.4: 5 residues within 4Å: Chain F: R.197, C.429, C.432, C.478, C.481 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.429, F:C.432, F:C.478, F:C.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manav, M.C. et al., Structural basis for inhibition of an archaeal CRISPR-Cas type I-D large subunit by an anti-CRISPR protein. Nat Commun (2020)

Release Date

2020-10-28

Peptides

SIRV3 AcrID1 (gp02) anti-CRISPR protein: ABDE
CRISPR-associated protein, CscA: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
A

E
B

C
C

F
C

SIRV3 AcrID1 (gp02) anti-CRISPR protein

CRISPR-associated protein, CscA

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