SMTL ID : 6thk.1

Structural mechanism of pyocin S5 import into Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.380, K.382, D.383, H.501, H.502, H.503 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.380, A:H.502

8 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: S.380, D.383, H.501, H.503 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.383, A:D.383, A:H.501, A:H.503 ZN.3: 2 residues within 4Å: Chain A: H.502, H.504 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.502, A:H.504, H2O.4 ZN.4: 1 residues within 4Å: Chain A: H.505 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.505, H2O.3 ZN.5: 3 residues within 4Å: Chain A: D.127, E.129, Y.171 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.127, A:D.127, A:E.129, A:E.129, H2O.3 ZN.6: 3 residues within 4Å: Chain A: K.217, E.221, E.288 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.221, A:E.288 ZN.7: 4 residues within 4Å: Chain A: K.370, H.371, E.485, E.489 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.371, A:E.485, A:E.489 ZN.8: 1 residues within 4Å: Chain A: E.311 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.311, A:E.311 ZN.9: 2 residues within 4Å: Chain A: E.333, E.336 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.333, A:E.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Behrens, H.M. et al., Pyocin S5 Import into Pseudomonas aeruginosa Reveals a Generic Mode of Bacteriocin Transport. Mbio (2020)

Release Date

2020-03-04

Peptides

Pyocin S5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pyocin S5