Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 6thq.2
(1 other biounit)
Crystal structure of branched-chain aminotransferase from thermophilic archaea Thermoproteus uzoniensis with norvaline
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.15 Å
Oligo State
homo-dimer
Ligands
2 x
PLP
:
PYRIDOXAL-5'-PHOSPHATE
(Non-covalent)
(Covalent)
PLP.1:
15 residues within 4Å:
Chain A:
H.63
,
R.66
,
R.151
,
K.162
,
Y.167
,
E.196
,
E.200
,
N.201
,
L.220
,
G.222
,
I.223
,
T.224
,
G.259
,
T.260
Ligands:
PY5.2
12
PLIP interactions
:
12 interactions with chain A
Hydrophobic interactions:
A:K.162
,
A:L.220
Hydrogen bonds:
A:Y.167
,
A:I.223
,
A:T.224
,
A:T.224
,
A:T.260
Water bridges:
A:R.66
,
A:R.225
,
A:T.260
Salt bridges:
A:H.63
,
A:R.66
PLP.3:
17 residues within 4Å:
Chain B:
H.63
,
R.66
,
R.151
,
K.162
,
Y.167
,
E.196
,
S.198
,
G.199
,
E.200
,
N.201
,
L.220
,
G.222
,
I.223
,
T.224
,
G.259
,
T.260
Ligands:
PY5.4
14
PLIP interactions
:
14 interactions with chain B
Hydrophobic interactions:
B:K.162
,
B:Y.167
,
B:L.220
Hydrogen bonds:
B:E.196
,
B:I.223
,
B:T.224
,
B:T.260
,
B:T.260
Water bridges:
B:R.66
,
B:K.162
,
B:R.225
Salt bridges:
B:H.63
,
B:R.66
,
B:K.162
2 x
PY5
:
2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID
(Non-covalent)
PY5.2:
21 residues within 4Å:
Chain A:
G.45
,
H.63
,
R.66
,
Y.103
,
K.162
,
Y.167
,
E.196
,
S.198
,
G.199
,
E.200
,
N.201
,
L.220
,
G.222
,
I.223
,
T.224
,
V.258
,
G.259
,
T.260
,
A.261
Chain B:
Y.38
Ligands:
PLP.1
17
PLIP interactions
:
17 interactions with chain A
Hydrophobic interactions:
A:Y.167
Hydrogen bonds:
A:Y.103
,
A:Y.103
,
A:K.162
,
A:Y.167
,
A:I.223
,
A:T.224
,
A:T.224
,
A:T.224
,
A:T.260
,
A:A.261
Water bridges:
A:R.66
,
A:R.225
,
A:T.260
Salt bridges:
A:H.63
,
A:R.66
,
A:K.162
PY5.4:
22 residues within 4Å:
Chain A:
Y.38
,
I.115
Chain B:
H.63
,
R.66
,
Y.103
,
R.105
,
R.151
,
K.162
,
Y.167
,
E.196
,
S.198
,
G.199
,
E.200
,
N.201
,
L.220
,
G.222
,
I.223
,
T.224
,
G.259
,
T.260
,
A.261
Ligands:
PLP.3
16
PLIP interactions
:
15 interactions with chain B
,
1 interactions with chain A
Hydrophobic interactions:
B:Y.167
,
A:I.115
Hydrogen bonds:
B:Y.103
,
B:E.196
,
B:I.223
,
B:T.224
,
B:T.260
,
B:T.260
,
B:A.261
,
B:A.262
Water bridges:
B:K.162
,
B:K.162
,
B:R.225
Salt bridges:
B:R.66
,
B:K.162
,
B:K.162
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Boyko, K.M. et al., Three-Dimensional Structure of Branched-Chain Amino Acid Transaminase from Thermoproteus uzoniensis in Complex with L-Norvaline. Crystallography Reports (2020)
Release Date
2020-09-30
Peptides
Branched-chain-amino-acid aminotransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
C
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Branched-chain-amino-acid aminotransferase
Related Entries With Identical Sequence
5ce8.1
|
6thq.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme